Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02943 ATGAACAACAACACGTCTTATGCCTGCATTGCGATTCCAGCTACATTGGTGCTTTTGCTGGCTCTCTGTGAAGGCACTTCAGGGCTAACACAAGTTGATGCCCTTCTGAGGTGGAAACAAAATCTCCCTCAGCAACCCATTTTGGACACATGGGTGATCAATTACACTGCAACAGCTCAAACTCCATGTTCATGGCGAGGTATCACATGTGATTCGCAAGGCAGTGTCACTATAATAAACCTGGCTTATACTGGACTTGCAGGTACCCTTCTAAATTTGAACTTGTCTGTTTTTCCTAACCTGCTTCGTCTTGATCTCAAAGTAAACAACCTCACTGGCTCCATTCCACAAAATATTGGGGTGCTCTCAAACCTCCAATTCCTTGACCTTTCCACCAACTATCTCAATGGCACTTTGCCTCTTTCCATCGCCAATCTGACTCGAGTTTTTGAGCTTGATGTGTCAAGAAATAACATATCAGGGGTATTAGACCCTCGCCTATTTCCTGATGGATCTGACAGTCCCAAAAGTGGCCTCATTGGTATCAGGAATCTTCTCTTCCAGGACACTTTGCTTGGAGGTAGAATTCTAGATGAAATAGGGAACATTAGAAACTTGACTCTGCTAGCTCTAGATGGAAACAACTTCGATGGCCCTATTCCCCCATCTCTAGGCAATTGCACACATTTAAGCATTCTTAGAATGTCTCAAAACAATCTCTCAGGCCCAATACCCCCAAGTATTGGTAAATTAACCAATCTAACCGATGTGCGCCTTTTCTCCAACAACTTAAATGGCACAGTGCCCCAAGAATTTGGCAACTTGTCTTCTTTGATTGTACTGCATCTTGCGGAGAACAACTTTGTTGGTGAATTACCACCAGAAGTGTGCAAAAGTGGGAAACTTGTAAATTTTAGTGCAGCCTATAATAGTTTCACTGGACCAATTCCAAGAAGTCTTAGAAACTGCCCATCTTTGTACAGAGTTCGACTTGAATACAACCGGCTGACAGGTTTTGCTGATAAGGATTTTGGCGTGTATCCTAACCTCAATTACATGGACTTCAGATACAACAGGGTGGAAGGTGACCTCTCTGCAAATTGGGGTGCCTGCAAAAACTTGCAATTTCTCAACATGGCAGGGAATGGAGTAAGTGGCAACATTCCAAGTGATATTTTTCAGTTGGACCAACTACAAGTGCTTGACCTATCCTCCAACCAAATATCAGGAGAGATTCCTCCACAGATAGGAAATTCCTTTAACTTGTATGAATTAAATTTGAGTCACAACAAACTCTCTGGTAAGGTACCGTCAGAAATTGGAAAGCTTTCCAGTTTGCAGTCGTTAGACCTCTCCATGAACATGCTGTTGGGTCCAATCCCAAATCAGATAGGGGACATCTCCAACTTGGAGAGTTTAAATCTGAGCAACAATGATTTTAACGACACAATCCCTTACCAAATTGGAAACCTTGCAGCTTTACAATATTTTTTGGACTTGAGTTACAACTCACTTTCAGGAGATATTCCTGCTAATCTCGGGAAGCTTTCAAATTTGATAAGCTTGAATATCTCTCACAACAATCTCTCAGGTTCTATCCCTCGCTCCCTTAGTGAAGTGCTGAGTTTGTCAGACATCAACCTCTCCTACAATAATTTGGAGGGTCCAGTTCCTGATGCTGGTATATTCAACTCTTCTCATCCCCTGGATTTGAGCAACAACAAAGATTTGTGTGGCCATATTCGGGGCCTGCGCCCTTGTAATTTCTCTCTCACTAAACCTGATGGTGGATCAAGTAAAAGACACAAGGCAGGGATTCCTATTTTTGCTTCCTTGGGAGGTGCTCTTTTTATTTCTTGGGTGTTAGTCGGGATTTTTTTCTTGACCTATAAGAGGAAATCAAGAGCTCCAAGACAAAGAAATTCATTCAGTAGACTGAATCCATTTTCAATTTGGTACTTCAATGGGAGAGTTGTGTACAGAGACATAATTGAGGCTACCGAGAACTTTGACAGCAAGTATTGCATTGGGGAAGGAGCACTGGGAAAAGTTTATAAAGCGGAGATGAAAGGAGGTCAAGTATTTGCTGTAAAAAGGTTGAAGTGTGATGCAGACTACTTAGATGTTGAGAGTATAAAATCCTTTCAGAATGAGGTAAAAGCCATGACAGAAACACGTCACCGAAACATTGTCAAGCTTTATGGATTTTGCTCGCAAGGGATGCACACCTTTTTAATTTATGAATATATGGATAGAGGGAACTTAGCTGACATGCTGAAAGGTGAAAATGATGCATTGGAACTAGATTGGCACAAGAGGGTTGATATCATCAAAGGTGTAGCAAGTGCTTTGTCCTATATGCATCATGATTGCACTCCACCTTTAATTCACAGAGACATATCAAGCAAAAACGTTTTACTATCCTTCAATCTTTCAGCTCATGTCTCAGATTTTGGAACTGCAAGGTTTCTGAAGCCAGATTCACCTATTTGGACATCATTTGCTGGCACATATGGTTATGCTGCCCCAGGTGACTTTGTCTCACTCCTTTTTGTTTCAAACTAA 2565 0.4168 MNNNTSYACIAIPATLVLLLALCEGTSGLTQVDALLRWKQNLPQQPILDTWVINYTATAQTPCSWRGITCDSQGSVTIINLAYTGLAGTLLNLNLSVFPNLLRLDLKVNNLTGSIPQNIGVLSNLQFLDLSTNYLNGTLPLSIANLTRVFELDVSRNNISGVLDPRLFPDGSDSPKSGLIGIRNLLFQDTLLGGRILDEIGNIRNLTLLALDGNNFDGPIPPSLGNCTHLSILRMSQNNLSGPIPPSIGKLTNLTDVRLFSNNLNGTVPQEFGNLSSLIVLHLAENNFVGELPPEVCKSGKLVNFSAAYNSFTGPIPRSLRNCPSLYRVRLEYNRLTGFADKDFGVYPNLNYMDFRYNRVEGDLSANWGACKNLQFLNMAGNGVSGNIPSDIFQLDQLQVLDLSSNQISGEIPPQIGNSFNLYELNLSHNKLSGKVPSEIGKLSSLQSLDLSMNMLLGPIPNQIGDISNLESLNLSNNDFNDTIPYQIGNLAALQYFLDLSYNSLSGDIPANLGKLSNLISLNISHNNLSGSIPRSLSEVLSLSDINLSYNNLEGPVPDAGIFNSSHPLDLSNNKDLCGHIRGLRPCNFSLTKPDGGSSKRHKAGIPIFASLGGALFISWVLVGIFFLTYKRKSRAPRQRNSFSRLNPFSIWYFNGRVVYRDIIEATENFDSKYCIGEGALGKVYKAEMKGGQVFAVKRLKCDADYLDVESIKSFQNEVKAMTETRHRNIVKLYGFCSQGMHTFLIYEYMDRGNLADMLKGENDALELDWHKRVDIIKGVASALSYMHHDCTPPLIHRDISSKNVLLSFNLSAHVSDFGTARFLKPDSPIWTSFAGTYGYAAPGDFVSLLFVSN 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02943 854 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Spst2g02943 854 Gene3D Ribonuclease Inhibitor 27 108 IPR032675 -
Spst2g02943 854 Gene3D Ribonuclease Inhibitor 462 587 IPR032675 -
Spst2g02943 854 Gene3D Ribonuclease Inhibitor 362 461 IPR032675 -
Spst2g02943 854 Gene3D Phosphorylase Kinase; domain 1 634 749 - -
Spst2g02943 854 SUPERFAMILY Protein kinase-like (PK-like) 643 843 IPR011009 -
Spst2g02943 854 Pfam Leucine Rich Repeat 518 538 IPR001611 GO:0005515
Spst2g02943 854 SMART LRR_typ_2 146 170 IPR003591 -
Spst2g02943 854 SMART LRR_typ_2 395 419 IPR003591 -
Spst2g02943 854 SMART LRR_typ_2 467 491 IPR003591 -
Spst2g02943 854 SMART LRR_typ_2 516 540 IPR003591 -
Spst2g02943 854 SMART LRR_typ_2 443 466 IPR003591 -
Spst2g02943 854 SMART LRR_typ_2 122 145 IPR003591 -
Spst2g02943 854 SMART LRR_typ_2 251 274 IPR003591 -
Spst2g02943 854 SMART LRR_typ_2 275 299 IPR003591 -
Spst2g02943 854 ProSiteProfiles Leucine-rich repeat profile. 397 419 IPR001611 GO:0005515
Spst2g02943 854 SMART serkin_6 670 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst2g02943 854 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 253 843 - -
Spst2g02943 854 FunFam Leucine-rich repeat receptor protein kinase MSP1 632 749 - -
Spst2g02943 854 Pfam Leucine rich repeat 397 456 IPR001611 GO:0005515
Spst2g02943 854 FunFam Leucine-rich repeat receptor-like protein kinase TDR 272 589 - -
Spst2g02943 854 SUPERFAMILY RNI-like 286 574 - -
Spst2g02943 854 Pfam Protein kinase domain 674 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst2g02943 854 FunFam Nuclear pore complex protein NUP107 29 168 - -
Spst2g02943 854 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 177 268 - -
Spst2g02943 854 ProSitePatterns Tyrosine protein kinases specific active-site signature. 795 807 IPR008266 GO:0004672|GO:0006468
Spst2g02943 854 Gene3D Ribonuclease Inhibitor 173 361 IPR032675 -
Spst2g02943 854 PRINTS Leucine-rich repeat signature 443 456 - -
Spst2g02943 854 PRINTS Leucine-rich repeat signature 398 411 - -
Spst2g02943 854 SUPERFAMILY L domain-like 60 385 - -
Spst2g02943 854 ProSiteProfiles Protein kinase domain profile. 670 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst2g02943 854 Gene3D Ribonuclease Inhibitor 109 172 IPR032675 -
Spst2g02943 854 Gene3D Transferase(Phosphotransferase) domain 1 750 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02943 Spst-Chr2 29168328 29170892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02943 8 844 Receptor kinase-like Gene Family AT4G08850 38.978 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst2g02943 Pkinase 8.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02943 - - var:108339503 1380.54