Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02942 ATGACCTACCACACGTGTTATGTCTGTCTTGCAAATGCAATCCCAGCAACGTTGTTGCTTTTTCTGGCTCTTTGTCGAGCCACTAATGGGCTAACTCAGGCTGAGGCTCTTATCAAGTGGAAACAGAGTCTACCTGACCAACCCACTTTGGACGCATGGGTGATCAATTCCACTGCAACAGCTCAAACTCCATGTTCATGGCGAGGTATCACATGTGATTCCCAAGGCAGTGTCACTATAATAAACCTGGCTTATACTGGACTTGCAGGTACCCTTCTAAATTTGAACTTGTCTGTTTTTCCTAACCTGCTTCGTCTTGATCTCAAAGTAAACAACCTCACTGGCTCCATTCCACAAAATATTGGGGTGCTCTCAAACCTCCAATTCCTTGACCTTTCCACCAACTATCTCAATGGCACTTTGCCTCTTTCCATCGCCAATCTGACTCAAGTTTTTGAGCTTGATGTGTCAAGAAATAACATATCAGGGGTATTAGACCCTCGCCTATTTCCTGATGGATCTGACAGTCCCAAAAGTGGCCTCATTGGTATCAGGAATCTTCTCTTCCAGGACACTTTGCTTGGAGGTAGAATTCCAGATGAAATAGGGAACATTAGAAACTTGACTCTGCTAGCTCTAGATGGAAACAACTTCGATGGCCCTATTCCCCCATCTCTAGGCAACTGCACATATTTAAGCATTCTTAGAATGCCTCAAAACAATCTCTCAGGCCCAATACCCCCAAGTATTGGTAAATTAACCAATCTAACCGATGTGCGCCTTTTCGGCAACAACTTAAATGGCACAGTGCCCCAAGGAATTGGCAACTTGTCTTCTTTGATTGTACTGCATCTTGCGGAGAACAACTTTGTTGGTGAATTACCACCAGAAGTGTGCAAAAGTGGGAAACTTGTAAATTTTAGTGCAGCCTATAATAGTTTCACTGGACCAATTCCAAGAAGTCTTAGAAACTGCCCATCTTTGTACAGAGTTCGACTTGAATACAACCGGCTGACAGGTTTTGCTGATCAGGATTTTGGCGTGTATCCTAACCTCACTTACATGGACTTCAGCTATAACAGGGTGGAAGGTGACCTCTCTGCAAATTGGGGTGCCTGCAAAAACTTGCAATTTCTCAACATGGCAGGGAATGGAGTAAGTGGCAACATTCCAAGTGAGATTTTTCAGTTGGACCAACTACAAGAGCTTGACCTATCCTCCAACCAAATATCAGGAGAGATTCCTCCACAGATAGGAAATTCCTTTAACTTGTATGAATTAAATTTGAGTGAAAACAAACTCTCTGGTATGGTACCAATAGAAATTGGAAACCTTTCCAATTTGCGATCCTTAGACCTCTCCATGAACATGCTGTTAGGACCAATCCCCAATCAGATAGGGGACGTCGCCAACTTGCAGAATTTAAATCTGAGCAACAATAACTTTAATGGCTCAATTCCCTACCAAGTTGGAAACCTTGCATCTTTACAAGATTTTTTGGATTTGAGTCACAATGATCTTTCAGGAGAAATTCCTTCTAATCTTGGGAAGCTTTCAAATTTGGTAAGCTTGAATATCTCTCACAACAATCTGTCAGGTCCAATCCCCGACCCCCTTAGTAAAATGGTTAGTTTGTCAGAACTCAACCTGTCCAATAACAATTTGGAGGGTGCAGTTCCTCAAGGTGGTATATTCAACTCTTCTCATCCAGTAGATTTGAGAAACAACAAAGATTTATGTGGGAATATTAAAGGTTTGCAAACTTGTAATGTCTCTCTCGCTAAACCTGATGGTGGATCAAGTAACAAAAAGAAGGTTGTGATCCCAATAGTTGCATCCTTGGGAGGTGCTCTTATTATTTCTTTGGTGTGTGTTGGGATTGTTTTCTTTTTCTACAAGAGAAATTCAAGAGCTCGAAGACAAAAAAGTTCAATCAAAAGACCAAATCCATTTTCCATTTGGTACTTCAATGGCAGAGTCGTGTATGGAGACATAATCGAAGCTACCAAGAACTTTGACAACCATTATTGCATCGGGGAAGGAGCATTGGGAAAAGTTTATAAAGCAGAGATGAAAGGAGGTCAAGTATATGCCGTAAAAAAGTTGAAGTGTGATGCAGAAAACTTAGATGTTGAGAGTATAAAATCCTTTCAGAGTGAGGTAGAAGCCTTGTCAGAAACACGCCACCGAAACATTGTCAAGCTTTATGGATTTTGCTCAGAAGGGATGCATACATTTTTAATTTATGAGTATATGGGTAGAGGGAACTTAGCTGACATGCTAAGAAATGACAAGGATGCATTAGTACTAGATTGGCCTAAGAGGGTTGACATTGTGAAAGGTGTAGCAAGCGCTTTGTCCTATATGCATCATGATTGTGCTCCACCTTTAATTCACAGAGACATATCGAGCAAGAACATTTTACTGTCCTCCAATTTTTCAGCTCATGTCTCAGATTTTGGAACTGCAAGGTTTCTGAAGCCAGATTCACCTATTTGGACATCATTTGCCGGCACATATGGTTATGCTGCTCCAGAGCTTGCTTACACCATGGCAGTGACTGAGAAATGTGATGTGTTCAGCTTTGGAGTTTTGGCTTTCGAGGTTCTTACGGGAAAACACCCCGGTGACCTTGTTTCCTACATACAAACTTCCAGTGAACAGAAAATAAACTTCAAAGAGATTTTAGACCCTCGTCTCTTGCATCCTTCCAAGAACAACATTTTGCAGCAATTGATATTGATTGCCAACCTTGCTCTTTCATGTTTACAAACCAATGCTCAATCTCGACCAACTATGCGACACATTGCTCAACTCATTGAAATGGATACTGCTGATATGTGA 2844 0.4142 MTYHTCYVCLANAIPATLLLFLALCRATNGLTQAEALIKWKQSLPDQPTLDAWVINSTATAQTPCSWRGITCDSQGSVTIINLAYTGLAGTLLNLNLSVFPNLLRLDLKVNNLTGSIPQNIGVLSNLQFLDLSTNYLNGTLPLSIANLTQVFELDVSRNNISGVLDPRLFPDGSDSPKSGLIGIRNLLFQDTLLGGRIPDEIGNIRNLTLLALDGNNFDGPIPPSLGNCTYLSILRMPQNNLSGPIPPSIGKLTNLTDVRLFGNNLNGTVPQGIGNLSSLIVLHLAENNFVGELPPEVCKSGKLVNFSAAYNSFTGPIPRSLRNCPSLYRVRLEYNRLTGFADQDFGVYPNLTYMDFSYNRVEGDLSANWGACKNLQFLNMAGNGVSGNIPSEIFQLDQLQELDLSSNQISGEIPPQIGNSFNLYELNLSENKLSGMVPIEIGNLSNLRSLDLSMNMLLGPIPNQIGDVANLQNLNLSNNNFNGSIPYQVGNLASLQDFLDLSHNDLSGEIPSNLGKLSNLVSLNISHNNLSGPIPDPLSKMVSLSELNLSNNNLEGAVPQGGIFNSSHPVDLRNNKDLCGNIKGLQTCNVSLAKPDGGSSNKKKVVIPIVASLGGALIISLVCVGIVFFFYKRNSRARRQKSSIKRPNPFSIWYFNGRVVYGDIIEATKNFDNHYCIGEGALGKVYKAEMKGGQVYAVKKLKCDAENLDVESIKSFQSEVEALSETRHRNIVKLYGFCSEGMHTFLIYEYMGRGNLADMLRNDKDALVLDWPKRVDIVKGVASALSYMHHDCAPPLIHRDISSKNILLSSNFSAHVSDFGTARFLKPDSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLAFEVLTGKHPGDLVSYIQTSSEQKINFKEILDPRLLHPSKNNILQQLILIANLALSCLQTNAQSRPTMRHIAQLIEMDTADM 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02942 947 SUPERFAMILY RNI-like 312 566 - -
Spst2g02942 947 FunFam Nuclear pore complex protein NUP107 31 170 - -
Spst2g02942 947 ProSiteProfiles Leucine-rich repeat profile. 399 421 IPR001611 GO:0005515
Spst2g02942 947 ProSiteProfiles Protein kinase domain profile. 672 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst2g02942 947 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Spst2g02942 947 FunFam MDIS1-interacting receptor like kinase 2 752 946 - -
Spst2g02942 947 Gene3D Phosphorylase Kinase; domain 1 633 751 - -
Spst2g02942 947 Pfam Leucine Rich Repeat 520 541 IPR001611 GO:0005515
Spst2g02942 947 Gene3D Ribonuclease Inhibitor 31 175 IPR032675 -
Spst2g02942 947 Gene3D Transferase(Phosphotransferase) domain 1 752 946 - -
Spst2g02942 947 Gene3D Ribonuclease Inhibitor 262 592 IPR032675 -
Spst2g02942 947 FunFam Leucine-rich repeat receptor protein kinase MSP1 634 751 - -
Spst2g02942 947 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 179 269 - -
Spst2g02942 947 FunFam Leucine-rich repeat receptor-like protein kinase TDR 274 591 - -
Spst2g02942 947 SUPERFAMILY Protein kinase-like (PK-like) 645 940 IPR011009 -
Spst2g02942 947 Gene3D Ribonuclease Inhibitor 176 261 IPR032675 -
Spst2g02942 947 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 240 940 - -
Spst2g02942 947 PRINTS Leucine-rich repeat signature 445 458 - -
Spst2g02942 947 PRINTS Leucine-rich repeat signature 400 413 - -
Spst2g02942 947 ProSitePatterns Tyrosine protein kinases specific active-site signature. 797 809 IPR008266 GO:0004672|GO:0006468
Spst2g02942 947 SMART serkin_6 672 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst2g02942 947 Pfam Leucine rich repeat 399 458 IPR001611 GO:0005515
Spst2g02942 947 SUPERFAMILY L domain-like 63 390 - -
Spst2g02942 947 Pfam Protein kinase domain 677 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst2g02942 947 SMART LRR_typ_2 277 301 IPR003591 -
Spst2g02942 947 SMART LRR_typ_2 445 469 IPR003591 -
Spst2g02942 947 SMART LRR_typ_2 542 567 IPR003591 -
Spst2g02942 947 SMART LRR_typ_2 124 147 IPR003591 -
Spst2g02942 947 SMART LRR_typ_2 493 518 IPR003591 -
Spst2g02942 947 SMART LRR_typ_2 397 421 IPR003591 -
Spst2g02942 947 SMART LRR_typ_2 148 172 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02942 Spst-Chr2 29161306 29164301 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02942 31 845 Receptor kinase-like Gene Family AT4G08850 39.407 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst2g02942 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02942 - - gmx:100814345 1593.56