Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02885 ATGGCTCAAGGTTGCTGGGTGCATATGCATGGTTCACAGTACCACGTGCAGGGACCGAAAGTGAGGAACTGGGATGATGAGGGTTTACGCCTAATCAATCTTCTTTACGAGTGTGCCACTTGTACTGAATCAGGAAACTTCACTGGTGCAGATATTGCACTGTATCATCTCTCTCTCCTTGCTTCCCCTCATGGTGATTCAATGCAACGCGTTGCCACTTATTTCACTGAGGCACTAGCATGTTGCCAAGTGGGCAAAAATTTGCGTGGTGTACCTAAAGTTCTTGGTTTGGTGAACTTGTTATCAACTCCTGAACAACAATTTGTCAAGCAGCTATTCTTTAAATTCTACCCCTTCCTAAAAACCGCACACACGATCACAAATCAGACCATTATTGAAGCCATGCAAGGGGAAACAGTGATTCATGTGCTTGATCTCAGTCCATCTAATACTGATCAGTGGACTAATCTCATGCAGGGTTTGAAAGAGCGTTTGACAAACACACCATACCTGAACATTACTGTTACAGCCATACATGAGAAGAAGGAAGTGTTAGAACAAATGGGGTTGCAACTGAAAGTTGAAGCTGACAGGTTGCATTTCCATTTCCAATTCAATCCTGTTGTGAGCAGTTTGGAGACCCTTGACCCTGAAACATTGCCTATCAAGAAAGGTGAGCCTCTTGCAATTAGCTGCGTGCTTCAGCTTCACTCTCTTCTGGCTGCCAATGATGATGATTTGGTCAAAATGAGGGGTCAAAGTGCTTTTGCAAAGATGCTTGCCAAACAGAAGAATAAGAAGGTGAATCCAAGTCCTGACTCAGCACTCTCACCTTTTTCTCCATGTCCATCACATAAGATGGAGTGTTTTCTGAATGGTTTGTGGAAGCTCCAACCCAAAGTGATGGTGATAACTGAGCAAGAGTCAGATGTTAATGGACCCAGTTTAACAGAGAGGGTGTACAAAGCTTTGAAATTTTACAGTGCACTGTTTGATTGCTTGGAAGCCTCCACTTCCAGAACATTGGTATGGAGAAGCCTATTGGAGAAGATGCTACTTGGTGAAGAGATAAAGAACATTGTTGCATGTGAAGGGGTTGAGAGAAAGGAGAGGCATGAGAAAATTGAAACATGGATCCCAAGGCTTGAATTGGCTGGATTTGGAAGGGTACCTCTCAGCTCCAATGGAATTTGGTTGGCAACAAAGTTTTTGGAAACCTATGTACCAGGATACCACGTCCATCACAAGAACAAATGCTTGTTTATTTGCTGGGAAAGAATTCCTCTTTTTTCAGTTTCAGCATGGAAGTTTGAGAAGGTATATACTGAATTGAGCAAGACAAAACATGAACATTTTGGTCTTATAACAAGGGCTAATAGGGTTACCCCCCATTCTACTAGTCCTCGTGGTACAGTTAATGTTGATGACTTTGGAGCCAAAGCAGATGGAGGAGATAATACCGAGGCATTTGGAAAGGCATGGAGTGAAGCATGTTCAAGAGGGGCTATGCTTGTGGTACCCGAAAATAGGATCTATCGTCTTAAACCAATAACATTTTCTGGTCCATGTCGACCCAACACTGCCTTTATGCTCTATGGCACAATCGAAGCATGGACTCAAATGTCGGCATACCAAGAAGATAGACAACACTGGATTATGTTTGATAGTGTTTCAAATTTCAGAGTTGGTGGTGGTGGCACATTCGATGGCAAAGGGAAAATGTGGTGGCAAAACTCCTGCAAAGCAACCACTAACCTTCCATGCAACGACGAACCAAGACCAAAGGCTGTGACTTTCTATCAATGCAAAAATTTGAAAGTGACAAACTTGATGTTCAAAGATGCACAACAAATGCACGTAACCTTTGAGAGATGCTTCAATGTTATTGCATCAAATATCGTCATCAGAGCACCCGGGGACAGCCCCAACACTGATGGAATTCATGTAGCAGATACACAAAATATTGTCATAAGCAATAGTGATATTGGGACAGGTGATGATTGTATTTCCATAATAAGTGGGTCACAAAACGTTCGAGCCACAGATATAACCTGCGGACCTGGACATGGAATAAGCATTGGAAGCTTGGGTGCTGATAACTCAGAAGCTGAAGTGTCCAATGTGGTAGTGAACAGAGCTACCTTAACAGGAACCACTAATGGAGTGAGAATAAAGACTTGGCAGGGAGGCTCTGGGTATGCAAGAAACATCAAATTTATGAACATAATGATGCAAAGTGTGACAAATCCCATAATCATAGACCAATACTACTGTGATCAAGCTGAGCCATGTCAAGAGCAGGACTCAGCTGTGCAATTAAGCAATGTGTTATACCAAAACATAAGAGGAACTAGTGCGTCAGAAGTGGCTATCAAATTTGACTGCAGCAGAGCAGTCCCATGCAGACAAATCTATCTGCAGGATGTGACTTTGGAGCCAGAAGGCAGAGGTGGCACCATTGCTACATGTGAAAATGTTAGATATGTCAACAGGGGAAGGTTTTTTCCTCAATGCACTCCATGA 2523 0.4289 MAQGCWVHMHGSQYHVQGPKVRNWDDEGLRLINLLYECATCTESGNFTGADIALYHLSLLASPHGDSMQRVATYFTEALACCQVGKNLRGVPKVLGLVNLLSTPEQQFVKQLFFKFYPFLKTAHTITNQTIIEAMQGETVIHVLDLSPSNTDQWTNLMQGLKERLTNTPYLNITVTAIHEKKEVLEQMGLQLKVEADRLHFHFQFNPVVSSLETLDPETLPIKKGEPLAISCVLQLHSLLAANDDDLVKMRGQSAFAKMLAKQKNKKVNPSPDSALSPFSPCPSHKMECFLNGLWKLQPKVMVITEQESDVNGPSLTERVYKALKFYSALFDCLEASTSRTLVWRSLLEKMLLGEEIKNIVACEGVERKERHEKIETWIPRLELAGFGRVPLSSNGIWLATKFLETYVPGYHVHHKNKCLFICWERIPLFSVSAWKFEKVYTELSKTKHEHFGLITRANRVTPHSTSPRGTVNVDDFGAKADGGDNTEAFGKAWSEACSRGAMLVVPENRIYRLKPITFSGPCRPNTAFMLYGTIEAWTQMSAYQEDRQHWIMFDSVSNFRVGGGGTFDGKGKMWWQNSCKATTNLPCNDEPRPKAVTFYQCKNLKVTNLMFKDAQQMHVTFERCFNVIASNIVIRAPGDSPNTDGIHVADTQNIVISNSDIGTGDDCISIISGSQNVRATDITCGPGHGISIGSLGADNSEAEVSNVVVNRATLTGTTNGVRIKTWQGGSGYARNIKFMNIMMQSVTNPIIIDQYYCDQAEPCQEQDSAVQLSNVLYQNIRGTSASEVAIKFDCSRAVPCRQIYLQDVTLEPEGRGGTIATCENVRYVNRGRFFPQCTP 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02885 840 FunFam Polygalacturonase QRT2 457 839 - -
Spst2g02885 840 ProSiteProfiles GRAS family profile. 22 436 IPR005202 -
Spst2g02885 840 PANTHER - 471 826 - -
Spst2g02885 840 SUPERFAMILY Pectin lyase-like 466 839 IPR011050 -
Spst2g02885 840 SMART pbh1 705 726 IPR006626 -
Spst2g02885 840 SMART pbh1 652 673 IPR006626 -
Spst2g02885 840 SMART pbh1 625 651 IPR006626 -
Spst2g02885 840 ProSitePatterns Polygalacturonase active site. 682 695 IPR000743 GO:0004650|GO:0005975
Spst2g02885 840 Gene3D - 456 834 IPR012334 -
Spst2g02885 840 Pfam GRAS domain family 31 436 IPR005202 -
Spst2g02885 840 Pfam Glycosyl hydrolases family 28 503 827 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02885 Spst-Chr2 28651250 28658643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02885 397 839 Glycoside Hydrolase AT3G07970 52.203 2.72e-152 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst2g02885 GRAS 7e-100 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02885 K01184 - gmx:732596 730.709