LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst2g02884	ATGGCTCCATCTTCTGTCACTTCCCGTTTTCATGAATCCGTCACTCGCCATGCACTTTGCTCCTATCTCTCTGAGTTTATCTCCACTTTCTTCTACGTCTTTCTTGTTGTTGGCTCTGGAATGTCCTCACGGAAGTTGATGCCTGATGCTTCACTGAACCCAACAAGCCTGGTTGTGGTTGCCATTGCAAGTGCTTTTGCATTGTCTTCTGTTCTTTATATTGCATGGGACATTTCAGGTGGACACGTCAATCCGGCCGTGACCTTTGCAATGGCAGTGGGAGGCCACGTTAGTGTACCAACCGCTCTCTTTTACTGGGTCGCTCAACTTATAGCCTCTGTTATGGCTTGTCTTGTTCTAAGGGTCATTGTTGTTGGCATGCATGTTCCAACATACACCATTGCAGAAGAGATGACAGGGTTTGGAGCATCAGTGTTAGAGGGTTTTCTGACATTTGTTTTGGTGTACACAGTGTATGCAGCCAGGGACCCTAGGCGTGGTCCAATGAGTTCCACAGGCATACTACTTGTTGGCTTCGTGGCTGGGGCAGGTGTCTTGGCTGCAGGTCCATTCTCTGGTGGGTCAATGAACCCTGCATGTGCTTTCGGCTCAGCAACCATTGCAGGTTCTTTCAGGAACCAAGCAGTGTATTGGGTTGGACCCTTGATTGGTGCTACCATAGCTGGACTTCTTTATGACAATGTGCTGTTCCGTTCACTGCCTTCAGGGCTTTCAGAAGGAATTGGGGTGTAA	753	0.4861	MAPSSVTSRFHESVTRHALCSYLSEFISTFFYVFLVVGSGMSSRKLMPDASLNPTSLVVVAIASAFALSSVLYIAWDISGGHVNPAVTFAMAVGGHVSVPTALFYWVAQLIASVMACLVLRVIVVGMHVPTYTIAEEMTGFGASVLEGFLTFVLVYTVYAARDPRRGPMSSTGILLVGFVAGAGVLAAGPFSGGSMNPACAFGSATIAGSFRNQAVYWVGPLIGATIAGLLYDNVLFRSLPSGLSEGIGV	250

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst2g02884	250	Gene3D	Glycerol uptake facilitator protein.	4	241	IPR023271	-
	Spst2g02884	250	SUPERFAMILY	Aquaporin-like	11	241	IPR023271	-
	Spst2g02884	250	FunFam	Probable aquaporin TIP5-1	4	243	-	-
	Spst2g02884	250	Pfam	Major intrinsic protein	18	232	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Spst2g02884	250	PANTHER	AQUAPORIN-8	10	237	IPR034294	-
	Spst2g02884	250	PRINTS	Major intrinsic protein family signature	178	200	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Spst2g02884	250	PRINTS	Major intrinsic protein family signature	20	39	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Spst2g02884	250	PRINTS	Major intrinsic protein family signature	64	88	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Spst2g02884	250	PRINTS	Major intrinsic protein family signature	215	235	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Spst2g02884	250	PRINTS	Major intrinsic protein family signature	146	164	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Spst2g02884	250	PRINTS	Major intrinsic protein family signature	101	120	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Spst2g02884	250	ProSitePatterns	MIP family signature.	82	90	IPR022357	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst2g02884	Spst-Chr2	28648402	28650291	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst2g02884	1	236	Major Intrinsic Protein MIP	AT3G47440	66.102	2.96e-108	311

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst2g02884	K09873		-	gmx:100801448	431.409

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst2g02884	2	28648402	28650291	Spst2g02884	2	28648402	28650291	ECH