Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02850 ATGAAAGAGATTTGTCGAAACTTCCAGCGAGGCAGCTGTCAATATGGAGAAAGGTGTAGATATTTACATGCCAACCAACAGCGAAAACCTAACGTTCAAGGTTTTGGAGGACAGAGCGCTTCTCACCAACAGCAAAGTACAAATCCTTTTGGATTTGGGTCTGGCTCTCGCTCTAGCTTTGGCTCACAACAACCGCAGAAGTCTAATTCTTTTGGTTTTGGCGCGCAGAACAGCTCCCACTTAAATGGGGGGCCTCATTCTGAGTATAAACCGAACCAATACAAGCCTTTTGAAAACAAATGGAGTCGACAGTCGTCCAAACCCCAAAATGGTGGGAAATCTGATAACAACCCCCAACCAGTGGATCATAAATGCACAGATCCTGAGATCTGCAAGCGCCAGATTGCAGAAGATTTCGAGAAAGAAAAACCAATTTGGATACTTACATGCTACAGTCATTGCAAAGGTGCTCCTTGTGACATTGTTGGTGATATTAGCTTTGAAGAATTGCGGGCATCAGCTTATGAGGATGCTAAACGTGGGATGAGCTTGCAATCAATAGTAAGAAATCTGATAAGAGCTTCCTTTATTATGTCTTTTTTGTTGACATTTGTTGAAAAAGAGAGAAATATACTAAAATCCAAGATGGTTGAATTTGAGAAACTACTTTCTGAACCTTACCAAAAACCAATAAATTCTTCTCTTGACAGTCAAAGACCCCAATCTATTGGAGCCAATGCAAATCTGTTTTCAGGAACATCTCAAAGTAATGGTCCTTTGTCAGTCTCAAGTTTTAGCCAACTGGGTACTTCAATGAGCATGGGATTTGGAAGAACTCCTAATGACCTAAGTCTTGAAAATTTAGTGTCTCAAAACTTTCCTATGGTGGCTGAGTGGTTTACATTGGTATCACTTGTAGAATTGGGTGATTCGAAGCCACCTGCACCACCAATAAACACTCTGGCACAGCCTAGTTTCTTTGGAAGTGGAGGAAACTCTTTGGCATCCAACACAGCAAACCTAAACAGCAGTGGCACCTTTGGAGTTCAAAGCAGCCCCCATTCTACACCACTGGATTTGACAATGTTTCCAGGTTCAACTCAGCAAACATCAGCAGCATTCAATAACTCTGGTCCTACTACATTGTTTCAAACAACATCAAATGTCCAGTTGCCAAATGAGTTACAAGTGGAGAATGTATCAGGAGATGTCAGTATTTGGCTAAAAGAGAAATGGAACCCGGGAGAGAAGCAGGACAAAATCCTCCTTAGGATTCCAGAAGAAGCTCCTCCTGATTCATTTGTACGGTAG 1311 0.4188 MKEICRNFQRGSCQYGERCRYLHANQQRKPNVQGFGGQSASHQQQSTNPFGFGSGSRSSFGSQQPQKSNSFGFGAQNSSHLNGGPHSEYKPNQYKPFENKWSRQSSKPQNGGKSDNNPQPVDHKCTDPEICKRQIAEDFEKEKPIWILTCYSHCKGAPCDIVGDISFEELRASAYEDAKRGMSLQSIVRNLIRASFIMSFLLTFVEKERNILKSKMVEFEKLLSEPYQKPINSSLDSQRPQSIGANANLFSGTSQSNGPLSVSSFSQLGTSMSMGFGRTPNDLSLENLVSQNFPMVAEWFTLVSLVELGDSKPPAPPINTLAQPSFFGSGGNSLASNTANLNSSGTFGVQSSPHSTPLDLTMFPGSTQQTSAAFNNSGPTTLFQTTSNVQLPNELQVENVSGDVSIWLKEKWNPGEKQDKILLRIPEEAPPDSFVR 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02850 436 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Spst2g02850 436 Gene3D - 1 57 - -
Spst2g02850 436 MobiDBLite consensus disorder prediction 30 86 - -
Spst2g02850 436 SUPERFAMILY CCCH zinc finger 2 24 IPR036855 GO:0046872
Spst2g02850 436 PANTHER NUCLEOPORIN-LIKE PROTEIN 2 91 391 - -
Spst2g02850 436 SMART c3hfinal6 2 25 IPR000571 GO:0046872
Spst2g02850 436 MobiDBLite consensus disorder prediction 30 126 - -
Spst2g02850 436 Pfam CCCH-type zinc finger 4 23 IPR041367 -
Spst2g02850 436 MobiDBLite consensus disorder prediction 97 119 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst2g02850 zf-CCCH_4 9.9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02850 K14321 - gmx:100814339 553.132