Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02844 ATGGGTGACCAAAAACAATATATTATGGGTGAACATATTGAGGGTTTTAAGAAGGCTTTCCAACAAGCCAAACAATTGTTTGGAATGTCCTTGACTGACGATCGATTTAATATTGATAAGGATGTATGCCAGGATTGTTTGGTCACTTTGGAAGACTTGTCAGATGACGAAAAGTCCTGCCAGGATGTGGAAGCCGATAACCCTCGACTACCCTTTCCTTTATCGTTGCCTCCTAGATTTATACCCTTCTTCGCAACTCCTCGAGCAAGTCGAGCTCAACCTCATGCACTCTTAATTCTCAACTTCACTGACCGCCTCTCTTGCAAGGAAGATGAACTGTTACAATGGAAGCACTCAAGATTAGTTGGAGACTGTCTTGTTAAAAACTATGCCAACTTCCAAGAATACCTTTGTGAGTACGTGATGATGGGGAGAGCACCATGCAGCGATGAAAGTGGATTGAAGAAGGGACCTTGGACCCCAGAAGAGGATAATATATTGGTGGAATACATTCAGAGACATGGGCATGGGAGTTGGAGAGCACTTCCAAATCTTGCAGGATTGAACAGGTGTGGAAAAAGTTGCAGGCTAAGGTGGACAAACTATTTGAGGCCTGATATCAAAAGAGGAAAATTCTCTGAGGAAGAAGAGCAACTCATCATCAGTTTACATGCAGTTCTTGGGAATAAGTGGTCTTCTATAGCAGGTCATCTGCCAGGTAGGACTGATAATGAAATCAAGAATTTCTGGAACACTCATTTAAAGAAAAAGCTTATGCAAATGGGGTTAGATCCAGTGACTCATCGTCCAAGATCGGATCACCTTGATCTTCTATCCATTCTTCAACAGTTGCTGGCTGCTACAAACATTGTCAGTAATTTCACAAACACTTGGGACATTAATGCTCTAAGGCTGCAATCAGATGCCACACAACTAGCCAAACTCCAATTGCTACAGAACATACTTCAAGTTCTTGTGGCAAGTCCTGCCTCAAACATGGACCTACTCAATCCTTTTGGACCATCATCTTCACTGCCAGATGGTTTCCTAACTGAAGTGTTGGGATTGGATCAGTCCAAGCTCCAAAACCTTTACAATGGTTTTCCTTCACAAAATCAGCCAATTTTCCAAAGCTTTGTTGAAGCCCCTCCTCAGCAGCAAGCTCTATCCACTGGGTATCACCTCATGAATGGAGGAAGCAACAGGAGTTGCATGAATTCTGAAAAGGTTGACAAACAACTTGATGCCCCATATTCAACACCATTAGATTCTCTTCCAGATCTAGCTTCTGCCTCACCTGAATGTTCCACTGGCAAGCAAATGGAAAACAAGGTCAACCCAAATGAGTTTTCTGACCCTTCTTCCACTTCAACCACCTTTGAAATGTGGGGAGATTTCATGTATGAGGATGTCAGCGATGCTTATTGGAAAGATCTGATAGAGTAA 1446 0.4267 MGDQKQYIMGEHIEGFKKAFQQAKQLFGMSLTDDRFNIDKDVCQDCLVTLEDLSDDEKSCQDVEADNPRLPFPLSLPPRFIPFFATPRASRAQPHALLILNFTDRLSCKEDELLQWKHSRLVGDCLVKNYANFQEYLCEYVMMGRAPCSDESGLKKGPWTPEEDNILVEYIQRHGHGSWRALPNLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIISLHAVLGNKWSSIAGHLPGRTDNEIKNFWNTHLKKKLMQMGLDPVTHRPRSDHLDLLSILQQLLAATNIVSNFTNTWDINALRLQSDATQLAKLQLLQNILQVLVASPASNMDLLNPFGPSSSLPDGFLTEVLGLDQSKLQNLYNGFPSQNQPIFQSFVEAPPQQQALSTGYHLMNGGSNRSCMNSEKVDKQLDAPYSTPLDSLPDLASASPECSTGKQMENKVNPNEFSDPSSTSTTFEMWGDFMYEDVSDAYWKDLIE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02844 481 ProSiteProfiles Myb-like domain profile. 204 254 IPR001005 -
Spst2g02844 481 FunFam MYB-related transcription factor 155 208 - -
Spst2g02844 481 CDD SANT 211 254 IPR001005 -
Spst2g02844 481 CDD SANT 158 203 IPR001005 -
Spst2g02844 481 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 151 203 IPR017930 -
Spst2g02844 481 Pfam Myb-like DNA-binding domain 209 254 IPR001005 -
Spst2g02844 481 Pfam Myb-like DNA-binding domain 156 203 IPR001005 -
Spst2g02844 481 SMART sant 155 205 IPR001005 -
Spst2g02844 481 SMART sant 208 256 IPR001005 -
Spst2g02844 481 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 143 399 - -
Spst2g02844 481 MobiDBLite consensus disorder prediction 419 456 - -
Spst2g02844 481 Gene3D - 155 208 - -
Spst2g02844 481 FunFam Transcription factor MYB39 211 272 - -
Spst2g02844 481 Gene3D - 211 258 - -
Spst2g02844 481 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 258 IPR017930 -
Spst2g02844 481 MobiDBLite consensus disorder prediction 430 456 - -
Spst2g02844 481 SUPERFAMILY Homeodomain-like 153 250 IPR009057 -
Spst2g02844 481 ProSiteProfiles Myb-like domain profile. 151 203 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02844 Spst-Chr2 28265393 28273079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02844 143 481 MYB Transcription Factor Family AT5G16770 50.000 2.04e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst2g02844 Myb_DNA-binding 3.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02844 K09422 - gmx:547488 538.11