Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02830 ATGGGAGACGAAGACGACGAGGAGGTGCTGGGTTGCGCCCCCACCGCTTCTGGTCAATCTGCTTCCACCAACAGCTTGCCACCTCCTGCCGACAACACTCTCCTCAAATTGAACCATCTCGACTTACATGCTGATGATGCTGGATCACAGGCTTCTCTTGCCAGTGGCAAGAAGAAAAAGAGAGGTCAACGAGCCGTTGGACCTGATAAGTGTGGAAGAGGTCTCCGCCAATTTAGCATGAAAGTGTGTGAGAAGGTAGAAAGCAGGGGAAGAACAACTTATAATGAGGTGGCAGATGAGCTTGTTGCTGAATTTTCTGATCCAAGCAATAGTGAATTGACCCCTGATCAGCAACAATACGATGAGAAAAACATCCGTCGGAGGGTCTATGATGCTCTGAACGTTCTCATGGCAATGGACATTATTTCTAAGGATAAAAAGGAAATCCAATGGAAGGGTCTTCCTCGTACTAGTGTGAATGATATTGAAGAAATAAAGTCAGAGCGTCTTGGGCTCAGGAATAGAATTGAAAAGAAAACAGCCTATCTGCAGGAGCTCGAGGAGCAATTCGTAGGCCTTCAGAACCTTATTCAACGAAATGAGCAGTTATATAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCTTTGCCTTTTATTCTGGTACAGACACGTCCTCATGCGACTGTGGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTTAATAGTACTCCTTTTGAGCTGCATGATGACAATTATGTTCTCAAGGCAATGAAATTTTGTGAGAGACCACAGGATGATAATACAACACACAATTTTACTGATGGAGGTGAAGGTTCTAGGATGTCAGGCCTGTCCCAGCCACAGGGTCCTCTTACAAATCTAATAATGTCAAATAGGCCTCCAACATCACCTCCCCTCCCTGGCATATTAAAGGCAAGGGTTAAGCAAGAGCATTAA 969 0.4469 MGDEDDEEVLGCAPTASGQSASTNSLPPPADNTLLKLNHLDLHADDAGSQASLASGKKKKRGQRAVGPDKCGRGLRQFSMKVCEKVESRGRTTYNEVADELVAEFSDPSNSELTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEEIKSERLGLRNRIEKKTAYLQELEEQFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQDDNTTHNFTDGGEGSRMSGLSQPQGPLTNLIMSNRPPTSPPLPGILKARVKQEH 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02830 322 SUPERFAMILY E2F-DP heterodimerization region 160 274 IPR037241 -
Spst2g02830 322 Gene3D - 67 158 IPR036388 -
Spst2g02830 322 Pfam Transcription factor DP 161 273 IPR014889 -
Spst2g02830 322 CDD DP_DD 158 261 IPR014889 -
Spst2g02830 322 Coils Coil 169 203 - -
Spst2g02830 322 PANTHER TRANSCRIPTION FACTOR DP 19 275 IPR015648 GO:0005667|GO:0051726
Spst2g02830 322 PIRSF Txn_factor_DP 8 322 IPR015648 GO:0005667|GO:0051726
Spst2g02830 322 FunFam Transcription factor-like protein DPB 159 283 - -
Spst2g02830 322 SMART DP_2 160 320 IPR014889 -
Spst2g02830 322 SMART E2F_TDP_2 70 153 IPR003316 GO:0005667|GO:0006355
Spst2g02830 322 MobiDBLite consensus disorder prediction 267 322 - -
Spst2g02830 322 MobiDBLite consensus disorder prediction 1 33 - -
Spst2g02830 322 MobiDBLite consensus disorder prediction 15 31 - -
Spst2g02830 322 Gene3D Transcription factor DP 159 278 IPR038168 -
Spst2g02830 322 FunFam Transcription factor-like protein DPB 65 158 - -
Spst2g02830 322 MobiDBLite consensus disorder prediction 49 71 - -
Spst2g02830 322 SUPERFAMILY "Winged helix" DNA-binding domain 73 154 IPR036390 -
Spst2g02830 322 Pfam E2F/DP family winged-helix DNA-binding domain 73 153 IPR003316 GO:0005667|GO:0006355
Spst2g02830 322 MobiDBLite consensus disorder prediction 273 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02830 Spst-Chr2 28203132 28205809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02830 72 271 E2F-DP Transcription Factor Family AT5G02470 54.229 2.03e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Spst2g02830 DP 9.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02830 K04683 - gmx:100800599 568.155