Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02820 ATGAGAGGTTTGAGAATATCGCTGTACGTTTGCAGCCTCCGTCGCCGTCAGCGGAGGAACTGCAGTGGCAAGTCATCAACTGTATATGCTTGTGCCAAAGAACAAGGGTTTAGTATTTTAGAGCTCAATTCATCACATTCTAGAAATGGGACTGCTATCAGGAACTTGGAAGAACCTCTTACTTCAATTGGGTTCCATAGATTGCAGGAAGCAATCTATCTTAAGTTGGAGATCCAAGAGTATAGTAATGTGATTATCCAATGGCTAACTCAACCTAATCTTCCTGTGGGTGGCATAGCTGGCCAATCAGATCGAGGTGCACAATCTGTTGTTCTTTCTGGTGGTTATGTGGATGACGAGGATCATGGAGAATGGTTTCTCTACACTGGAAGCGGTGATAAGGATCTTAGCGGCAACAAACGTACCAACAAGAGTCACTCTTTTGACCAGAAGTTTGAGAAGTACAACCGTGCACTTCACGTTAGTTGTCTCCAGGGTTATCCTGTTCGGGTTGTCAGATCTCAAAAAGAAAAGCGATCTTCATATGCCCCAGAGATTGGCGTGCGGTATGATGGAATTTATAGAATTGAAAAGTGTTGGCAGATAGCGGGATTGCAGGGTTTCAAAGTTTGCCGGTATCTATTCGTTAGTGATGATGTTGGAGATAGGCCCAGAGCCTTGCCGGTCATTCGTGAACTGAAAAAGGCTACAGTTATATATGAAAGGACTGAATCTGCATCTTGGGATTATGATGCGAAAGATTGTCGTTGGAAATGGATGAAACCACCACCTCCCAGCAGCAAAAAGGTACAAATTGAAGAACCCGTAGAGGTAACAAGGGCAAAGACAGATAGCGATATAAGGAAGTTCCAACTTAATTCTATCAAGGAACAATTGCATAAAGGGTTCTCGTGCATGATATGTAAGGAAGTTATGGTTTCACCAGTGACTACACCTTATGCTCATAACTTCTGCAAGTCCTGTTTGGAAGGTGAATTTGCTGGTCAGGCTTTTGTGAAGGAGAGAAGTAGGGGTGGGAGAACGCTTCGTTCCCAGAAAAATGTGATGAAATGTCCTTCCTGCCCTATTGACATTTCTGATTATCTTCAGAACATTCAGGTTGATATAGATTTGAAGAGTGCGATTGAGTCACTGAAAGCCAAGGTAGAAGAAATTGAAGAATCACTGGAATCAAGTGAAGATGCAGCAGATGGATTTCAGGACAACGGTGTTGGCAAGGATGACGATACTGATTCAGGGAACCAAAATTCTGTAGAGCAGTTGAATGATCTACCGGAAGGATCTGATGTCGATGAGCTTAAAGACACCAATACTAAGGGGCAAGATTGA 1350 0.4311 MRGLRISLYVCSLRRRQRRNCSGKSSTVYACAKEQGFSILELNSSHSRNGTAIRNLEEPLTSIGFHRLQEAIYLKLEIQEYSNVIIQWLTQPNLPVGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGDKDLSGNKRTNKSHSFDQKFEKYNRALHVSCLQGYPVRVVRSQKEKRSSYAPEIGVRYDGIYRIEKCWQIAGLQGFKVCRYLFVSDDVGDRPRALPVIRELKKATVIYERTESASWDYDAKDCRWKWMKPPPPSSKKVQIEEPVEVTRAKTDSDIRKFQLNSIKEQLHKGFSCMICKEVMVSPVTTPYAHNFCKSCLEGEFAGQAFVKERSRGGRTLRSQKNVMKCPSCPIDISDYLQNIQVDIDLKSAIESLKAKVEEIEESLESSEDAADGFQDNGVGKDDDTDSGNQNSVEQLNDLPEGSDVDELKDTNTKGQD 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02820 449 Coils Coil 382 409 - -
Spst2g02820 449 ProSiteProfiles YDG domain profile. 69 217 IPR003105 -
Spst2g02820 449 Gene3D - 20 96 IPR027417 -
Spst2g02820 449 MobiDBLite consensus disorder prediction 434 449 - -
Spst2g02820 449 SUPERFAMILY RING/U-box 297 386 - -
Spst2g02820 449 Gene3D - 97 252 IPR036987 -
Spst2g02820 449 MobiDBLite consensus disorder prediction 393 449 - -
Spst2g02820 449 MobiDBLite consensus disorder prediction 416 430 - -
Spst2g02820 449 SUPERFAMILY PUA domain-like 95 220 IPR015947 -
Spst2g02820 449 ProSiteProfiles Zinc finger RING-type profile. 305 361 IPR001841 -
Spst2g02820 449 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 95 398 IPR045134 -
Spst2g02820 449 Pfam SAD/SRA domain 95 217 IPR003105 -
Spst2g02820 449 SMART ring_2 305 361 IPR001841 -
Spst2g02820 449 Pfam RING-type zinc-finger 305 359 IPR027370 -
Spst2g02820 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 407 IPR013083 -
Spst2g02820 449 SMART G9a_1 77 221 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02820 Spst-Chr2 28105724 28112128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02820 96 425 C2H2 Transcription Factor Family AT5G39550 53.372 1.25e-117 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02820 K10638 - gmx:100801535 595.504