Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02752 ATGGCTTTCTTTTTCCTCTTTATCCTCTCCCTTGTTGCTTCTTCTGCCACTGCTTGCGATCGCTGCCTGCACCAATCCAAGGCTTCCTATTTCTCCAAAGCTTCTGCTCTTTCATCTGGGGCATGTGGGTATGGGTCTTTGGCTCTAGACATAAGTGGTGGACACCTTGCTGCTGGTGTGGCCTCTCTCTTCAAAAATGGAGCCGGTTGTGGTGCGTGCTTTCAGATACGATGCAAGAACTCAAGTGTTTGCAGCAAAGTGGGTACCAGAGTGGTATTGACTGATCTTAATCACGACAATCGAACTGACTTTGTGCTCAGCAGCAGAGCCTTCTCAGCCTTGGCTCAGAAGGGCATGAGCCAACAAATATTGAAACTTGGCATTCTTGACATTGAACACAAGAGAGTACCTTGTGATTACAAAAATCAGAATCTGGCGATCCGTGTAGAAGAATCAAGCAAGAAGCCTGATTATTTAGCAATTAAATTTTTGTACCAAGGAGGTCAAACAGAGATAGGAGCCGTTGATGTGGCTCAGGTTGGGTCCTCAAATTGGAGCTTCATGAGCAGAAACCATGGGGCAGTGTGGGACACAAGTAGGGTACCAGAAGGTGCATTGCAGTTTCGGTTTGTGGTAACAGCAGGGTATGATGGAAAGTGGATCTGGGCAAAGAACGTTCTACCTGCTGATTGGAAAAATGGAGTCATATATGACTCTGGCCTTCAAATTTCAGACACTGCACAAGAGGGTTGTTTCCCTTGTGATGATGCCACCTGGTCATGA 783 0.4649 MAFFFLFILSLVASSATACDRCLHQSKASYFSKASALSSGACGYGSLALDISGGHLAAGVASLFKNGAGCGACFQIRCKNSSVCSKVGTRVVLTDLNHDNRTDFVLSSRAFSALAQKGMSQQILKLGILDIEHKRVPCDYKNQNLAIRVEESSKKPDYLAIKFLYQGGQTEIGAVDVAQVGSSNWSFMSRNHGAVWDTSRVPEGALQFRFVVTAGYDGKWIWAKNVLPADWKNGVIYDSGLQISDTAQEGCFPCDDATWS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02752 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Spst2g02752 260 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Spst2g02752 260 PANTHER EXPANSIN-B3 11 242 - -
Spst2g02752 260 Pfam Lytic transglycolase 57 131 IPR009009 -
Spst2g02752 260 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Spst2g02752 260 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Spst2g02752 260 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Spst2g02752 260 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Spst2g02752 260 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Spst2g02752 260 PRINTS Major pollen allergen Lol pI signature 164 179 IPR005795 GO:0005576|GO:0019953
Spst2g02752 260 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576|GO:0019953
Spst2g02752 260 PRINTS Major pollen allergen Lol pI signature 58 69 IPR005795 GO:0005576|GO:0019953
Spst2g02752 260 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Spst2g02752 260 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576|GO:0019953
Spst2g02752 260 FunFam Expansin-like A2 140 244 - -
Spst2g02752 260 Pfam Expansin C-terminal domain 146 228 IPR007117 -
Spst2g02752 260 SUPERFAMILY Barwin-like endoglucanases 9 142 IPR036908 -
Spst2g02752 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Spst2g02752 260 CDD DPBB_EXLA_N 14 140 - -
Spst2g02752 260 Gene3D - 9 139 IPR036908 -
Spst2g02752 260 Gene3D - 140 243 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02752 Spst-Chr2 27246974 27248518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02752 16 260 Expansin Gene Family AT4G38400 64.777 1.31e-110 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02752 - - gmx:100305884 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02752 2 27246974 27248518 Spst2g02752 2 27246974 27248518 ECH