LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst2g02742	ATGGATTTAGCTAATTCCCATGTAGTTGTTAAACAACTTCCGAGTTCTGCTCACACTAGCAAGCCGGTCTGTTTGATGAAAAAGAACTCTTTAAGGCGAAGGTGTTTTGCTTTCACTGGGGCACATGAGATTTTCAGACCAGAGATGTGGAAAGCTGCTCTAACAGAATTAACAGCAACTGCATCGCTAATGTTCACCTTGACCACTTCCATTGTTGCATGCTTGGACTCACACGAGGTCGATCCTAAGCTTCTTGTTCCCCCTGCAGTTTTCATCATAGCCTTTTTGTTCCTACTTGTGACAGTTCCTCTCTCTGGGGGCCACATGAGTCCCGTTTTCACATTCATTGCTGCTTTAAAGGGTGTTGTCACTCTCACCCGTGCTCTCATGTACGTCTTAGCGCAATGCGTTGGCTCAATAATTGGTTTCTTTATACTAAAGTGCATCATGGACCCCAAATTAGCTTACACATATTCCTTGGGAGGTTGTACCATTGATGGCCGAAGTGTGAATTCTGGCGTCAAGCCAGGGAATGCTTTGATAGTGGAATTCACATGCACGTTTGTGGTACTCTTTCTGGGAGTTACATTGGCATTTGACAAGAAAAGGTCTAGGGAATTGGGCTTGCCAATGGTGTGTTTGGTGGTGGCAGGAGCCATGGCATTGGCAGTGTTTGTGTCCATAACTGTAACTGGGCAGACTGGTTATGCTGGTGTAGGCCTGAACCCTGCAAGATGTTTAGGCCCGGCATTGTTTCTTGGAGGCTCACTTTGGAATGGACATTGGGTTTTCTGGCTTGGGCCTTTCTTGGCTTGCATAGTGTATTATTTTTTGTCTATCAACCTGCCAAAGGAGGGTTTGGTTTGGGCAGATAGAGAACATGATGTATTAAACTTGGCTCTCGGTTGTTGTGGGAATGTCTATGATACTTCCTTTTCAAAGGATATGCCAGAAGAATGCAATGCAGGGTTACAAGTCCAACCTAGGGGCTTAGTTCATGACCAGTCTTCAGAGTCCAAATTCCTTGCCTTTATTGGTGCCCACGAAATTTTCACAATAGAGACGTGGAAAGCAGCTTTGGTAGAGTTCATTGCAAGTGGTGCTCTAATTCGTCAGCGTAGTCTTCTTGGTTTTAATTGTGATGGTTCCTCTATCCGGGGGTCATATGAACCCTGTTTTCACATTCGTTGCTGCTTTAAAGGGTGTTGTGACCCTTTCTCGTGCTCTCCTTTACGTCCTTGCACAATGCGTTGGCTCAGTAAGTGGTTTCCTTGTACTCAAGAGTGTGATGGACTCAAAATTAGCAGACACATATTCTCTGGGAGGTTGTGTGCAATTGGTGACAAAGGACAAAGTTCTGCCATGAAGCCACAAGATGCTTTGTTGTTGGAATTCTCTTGCACGTTTTTGGTACTCTTTGTTGGTATAACGGTGGCATTTGATAAGAAAAGGTGCAAGGAATTGGGCTTTCCAATGGTGTGTTTGGTGGTAGCAGCATCCATGGCACTGGCAGTTTTTGTGTCCATAACTGTCACCGGAAGGCCTGCTTATGCAGGTGAGGGCCTCAGCCCGGCAAGATGTTTAGGCCCAGCGTTGCTTCACAGAGGCTCACTATGGAATGGGGCATTGGATTTTCTGGGTTGGGCCTTTCTTGGCCTGTATAATCTATTATAG	1674	0.4558	MDLANSHVVVKQLPSSAHTSKPVCLMKKNSLRRRCFAFTGAHEIFRPEMWKAALTELTATASLMFTLTTSIVACLDSHEVDPKLLVPPAVFIIAFLFLLVTVPLSGGHMSPVFTFIAALKGVVTLTRALMYVLAQCVGSIIGFFILKCIMDPKLAYTYSLGGCTIDGRSVNSGVKPGNALIVEFTCTFVVLFLGVTLAFDKKRSRELGLPMVCLVVAGAMALAVFVSITVTGQTGYAGVGLNPARCLGPALFLGGSLWNGHWVFWLGPFLACIVYYFLSINLPKEGLVWADREHDVLNLALGCCGNVYDTSFSKDMPEECNAGLQVQPRGLVHDQSSESKFLAFIGAHEIFTIETWKAALVEFIASGALIRQRSLLGFNCDGSSIRGSYEPCFHIRCCFKGCCDPFSCSPLRPCTMRWLSKWFPCTQECDGLKISRHIFSGRLCAIGDKGQSSAMKPQDALLLEFSCTFLVLFVGITVAFDKKRCKELGFPMVCLVVAASMALAVFVSITVTGRPAYAGEGLSPARCLGPALLHRGSLWNGALDFLGWAFLGLYNLL	557

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst2g02742	557	PRINTS	Major intrinsic protein family signature	223	245	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Spst2g02742	557	PRINTS	Major intrinsic protein family signature	182	200	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Spst2g02742	557	PRINTS	Major intrinsic protein family signature	90	114	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Spst2g02742	557	PRINTS	Major intrinsic protein family signature	127	146	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Spst2g02742	557	PRINTS	Major intrinsic protein family signature	51	70	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Spst2g02742	557	PRINTS	Major intrinsic protein family signature	262	282	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Spst2g02742	557	Pfam	Major intrinsic protein	46	273	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Spst2g02742	557	SUPERFAMILY	Aquaporin-like	42	277	IPR023271	-
	Spst2g02742	557	Gene3D	Glycerol uptake facilitator protein.	35	284	IPR023271	-
	Spst2g02742	557	Gene3D	Glycerol uptake facilitator protein.	431	554	IPR023271	-
	Spst2g02742	557	SUPERFAMILY	Aquaporin-like	455	541	IPR023271	-
	Spst2g02742	557	PANTHER	AQUAPORIN-LIKE	24	301	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst2g02742	Spst-Chr2	27184760	27188878	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst2g02742	33	285	Major Intrinsic Protein MIP	AT1G73190	29.478	1.78e-23	98.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst2g02742	K09866		-	gmx:100804160	545.814

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst2g02742	2	27184760	27188878	Spst2g02742	2	27184760	27188878	ECH