Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02733 ATGGCTCCATGGTCTGAAGTTGAACCAATGGATTGTACCGCTGGAAGAAAGACACAAAAGGCTGACCGAGAAAAGCTAAGAAGGGATCGACTCAATGAACAATTTGTAGTACTGGGCAACATTTTAGATCCTGATAGGCCCAAAAATGACAAAGCAACCATTATAGGTGATACCATTCAATTGCTAAAGGACCTTAGTTCTCAAGTTAGTAAACTTAAAGATGAATATGCTACACTAAATGAAGAATCGTGTGAGTTGGCTCATGAGAAAAATGGTCTCAGAGAAGAGAAGGCTTCTCTTAAATCGGATATTGAGAAGTTGAATAATCAGTATCAGCTACAGCTCAGGACTGTGTCTCCATGGGCTGCAATGGATCAGTCAGTAATGGTAGCTCCACCATCATATCCATATCCAGTCCCAATGGCAATACCTCCTGCTCCAATTGGCATGCAGCCATACCCCTTCTATGCTAATCAACATTCTGCCATCATCCCTAACCCTTGTTCAACATATGTTCCTTATTTAGTCCCCAATACCCTTGTTGAACAGCAATCCATGCAGCACATAGCTCCACCTCTTCATCCAGGTTTTCAATCCCACAATTCAGGAAAACAAGAGTCCAGAATTAAATCCAAGGAGAGCAAGACTGAAAAACATAAGGATTCAATTGGCGTCACTGCAGACCAGACTTCTGGATCTTCTGCAGACCAGGTTAGACTTGTCATCTGGACAAAGAAAACCTAG 744 0.422 MAPWSEVEPMDCTAGRKTQKADREKLRRDRLNEQFVVLGNILDPDRPKNDKATIIGDTIQLLKDLSSQVSKLKDEYATLNEESCELAHEKNGLREEKASLKSDIEKLNNQYQLQLRTVSPWAAMDQSVMVAPPSYPYPVPMAIPPAPIGMQPYPFYANQHSAIIPNPCSTYVPYLVPNTLVEQQSMQHIAPPLHPGFQSHNSGKQESRIKSKESKTEKHKDSIGVTADQTSGSSADQVRLVIWTKKT 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02733 247 Gene3D - 14 94 IPR036638 GO:0046983
Spst2g02733 247 Coils Coil 90 117 - -
Spst2g02733 247 PANTHER TRANSCRIPTION FACTOR BHLH121 6 237 IPR044579 GO:0003700|GO:0006879
Spst2g02733 247 MobiDBLite consensus disorder prediction 190 237 - -
Spst2g02733 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 84 IPR036638 GO:0046983
Spst2g02733 247 SMART finulus 21 71 IPR011598 GO:0046983
Spst2g02733 247 MobiDBLite consensus disorder prediction 1 25 - -
Spst2g02733 247 MobiDBLite consensus disorder prediction 205 224 - -
Spst2g02733 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 15 65 IPR011598 GO:0046983
Spst2g02733 247 CDD bHLH_AtILR3_like 20 94 - -
Spst2g02733 247 Coils Coil 62 82 - -
Spst2g02733 247 Pfam Helix-loop-helix DNA-binding domain 16 65 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02733 Spst-Chr2 27122498 27124069 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02733 5 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 57.613 8.88e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst2g02733 HLH 3.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02733 - - gmx:100817000 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02733 2 27122498 27124069 Spst2g02733 2 27122498 27124069 ECH