Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02705 ATGAACTCCACTTCAGACATGGACCTCCCTATTACCGACGATGATGGATCGGATCTTCATTGCATGGATGAGGAGGAGAAGACACAAGAGGAGGATGACTACATAGAAGACGCTGAGATAAACGAGACTGACTATAAGATCTCATCCGAGGAGCAGCAGCACTACACAGTTTTGACCGAATCTGACATCAAGCGACTTCAAGACGAGGACATCAACCAGGTTTCCTGCGTTCTCTTCGTACCAAGAACTGCTGCTTGCCTTTTGCTTGTCCACCATGAGTGGAGTGTGGTCAAAGTGCACGAAGCATGGTTCAACAATGAAGAAAAAGTTCGCAAAGTTGTAGGGTTAATGCAGCATGAAGCCCTGCAGGTAGGCTTTCCCAACTCAAAAACCCTCCAATGTGAGATATGCTTAAATGTGGTTTCTGGGGATAAGGTTAGATCAGCTGGTTGTGGCCATCTATATTGCATGGTTTGCTGGAAACTATACGTTGATGTAAGCATCGACGCCGGCCCTGAAAGGTGCTTGAAACTTAGATGCCCCCGACCCAATTGTGATATATCTGTGGGCGGAGACATGATCTTCGAATTGGCAAGTGGGTCAAGGAGGAACAGGTACGATTGTTTTCTGCTCCGATCTTACGTTGAAAACAACAAGAAGATGAAGTGGTGTCCTGCTCCAGCGTGTGAGTATGCTGTGATCTATGAACCGGACGGTGTTAGAACCAATTCAGATGTTACCTGTCTTTGCTGTCACTCCTTTTGTTGGAGTTGTGGAGAAGAAGCTCATAGCCCCTTGGATTGTGAAACCGCAAAACACTGGATCATGAAGAATGATTCCGAATCATCTGGGAACGCTGCTTGGATTCTCACCAACACCAAACCGTGTCCTTACTGCAAGAAACCCATTGAGAAAGATGAAGGGTGCATGCTCATGGAGTGCAAGTGCGGGTTTCATTTTTGCTGGCTATGTCTTCGAGAGTGGGCCAAGTGCGGGTGTAGCCGCAATCATGTAGCGGACGAAGATAATAACAAGAAGGAAGTGAAGAGAAAGGTGGTGAGGGATTATTTGAGGAACTACAACCAGTACTATGAGGGATGGAGAAGGAATGATTTCTCAAGAAAAATTGCGGTGAGGCAAATGAGGGAGGTGATGAATAGCGGATATAAAATGAAACTGGGTATGCTATATGGAAGAGCAGAAGATGAATTTGTGTTCATAGAGGTGGCATGGAAAGCGGTGGTGGAGTGTGAGCGAGTGCTGAAATGGAGCCATCCCTATGGTTACTACCTGCCTCCCAGAGAGGAAGCCAAAAGAGAATATTACGAGTACAACCAACGCCAGGCTGAGACTGTTTTGCGGAAGCTAAAACACTGCGTTGAAATGGAACTGCAGGTGTTCCTCAATGGTAATGAGCCAATTGAAAGATTTGATAGTTTGCGCTTGAAGGTAGTGGAACTTACCCGTATCACCAAGACCTATTTTCAGAACTTTGTGTCTGCACTGGAGAAAGGGCTGGAAGAAGTGCAGGTTAGCAGATATCGTCCTCGGAAAAGAGTGGAGATGATGGAGACGGGGGAGAGCTCAAGCGCAAAGAAAAAGAGAATCAAAACCGATTCTATTTAG 1626 0.4619 MNSTSDMDLPITDDDGSDLHCMDEEEKTQEEDDYIEDAEINETDYKISSEEQQHYTVLTESDIKRLQDEDINQVSCVLFVPRTAACLLLVHHEWSVVKVHEAWFNNEEKVRKVVGLMQHEALQVGFPNSKTLQCEICLNVVSGDKVRSAGCGHLYCMVCWKLYVDVSIDAGPERCLKLRCPRPNCDISVGGDMIFELASGSRRNRYDCFLLRSYVENNKKMKWCPAPACEYAVIYEPDGVRTNSDVTCLCCHSFCWSCGEEAHSPLDCETAKHWIMKNDSESSGNAAWILTNTKPCPYCKKPIEKDEGCMLMECKCGFHFCWLCLREWAKCGCSRNHVADEDNNKKEVKRKVVRDYLRNYNQYYEGWRRNDFSRKIAVRQMREVMNSGYKMKLGMLYGRAEDEFVFIEVAWKAVVECERVLKWSHPYGYYLPPREEAKREYYEYNQRQAETVLRKLKHCVEMELQVFLNGNEPIERFDSLRLKVVELTRITKTYFQNFVSALEKGLEEVQVSRYRPRKRVEMMETGESSSAKKKRIKTDSI 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02705 541 SMART ibrneu5 281 333 IPR002867 GO:0008270
Spst2g02705 541 SMART ibrneu5 204 268 IPR002867 GO:0008270
Spst2g02705 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 216 IPR013083 -
Spst2g02705 541 Gene3D - 264 510 - -
Spst2g02705 541 SUPERFAMILY RING/U-box 128 216 - -
Spst2g02705 541 ProSiteProfiles TRIAD supradomain profile. 130 343 IPR044066 -
Spst2g02705 541 MobiDBLite consensus disorder prediction 1 32 - -
Spst2g02705 541 SUPERFAMILY RING/U-box 288 337 - -
Spst2g02705 541 MobiDBLite consensus disorder prediction 521 541 - -
Spst2g02705 541 CDD BRcat_RBR_ANKIB1 211 277 - -
Spst2g02705 541 Pfam IBR domain, a half RING-finger domain 292 329 IPR002867 GO:0008270
Spst2g02705 541 Pfam IBR domain, a half RING-finger domain 205 268 IPR002867 GO:0008270
Spst2g02705 541 ProSiteProfiles Zinc finger RING-type profile. 134 181 IPR001841 -
Spst2g02705 541 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 48 423 IPR031127 GO:0004842|GO:0016567
Spst2g02705 541 FunFam RBR-type E3 ubiquitin transferase 128 218 - -
Spst2g02705 541 SUPERFAMILY RING/U-box 205 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02705 Spst-Chr2 26822607 26824232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02705 47 509 ARIADNE family AT1G65430 44.000 2.30e-143 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02705 K11968 - gmx:100801350 674.47