Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02676 ATGAGTTCTCGGATAGGCAAGGGACCTGTTGTCAGAAGTTATCGGAGGAGAAAGACAGTTTTGGACCTTGACCTTAATCGGGAACCAGCTAGTGAGAATCGTGAGCAGGAGGGACCTTCAACTCAGTCAGGGGCTCAAGAAGTTCTAGTTGAACAGCAGCCGTTGGCCTCTCAACCAACAATGATTGATGTGGAAGACATTGATGATGATGTTGTTGAATGTACCCCAAGGGCTTTTGCTGAGGCTAAAAACAAATCAAGAAGAAACCAGGCGAGGACTATAGTTGATGTTGATCTAGAAGATCAGACTAGGCGCACTAAGCGCAGAAGAGAATTGCGAAATCAAACAATTATTAATTGTGAGAAGTATATAAATTTGGAAGGCAGTAGCAGTTCTATGAGTGATAGTGCTAAAAAGCATCCCGAACCTCGAATCGAGCCTGTTTTCAACTGTCCAATTTGTATGGGTCCTTTGGCAGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGAATTGCATCAAGGCTGCTATAAGTGCTCAGGGAAAATGCCCTACCTGTAGAAAAAAGATTACTGTCAAAGAGCTTATAAGGGTGTTTCTCCCATCAACTAGTTGA 621 0.4283 MSSRIGKGPVVRSYRRRKTVLDLDLNREPASENREQEGPSTQSGAQEVLVEQQPLASQPTMIDVEDIDDDVVECTPRAFAEAKNKSRRNQARTIVDVDLEDQTRRTKRRRELRNQTIINCEKYINLEGSSSSMSDSAKKHPEPRIEPVFNCPICMGPLAEEMSTRCGHIFCKNCIKAAISAQGKCPTCRKKITVKELIRVFLPSTS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02676 206 SMART ring_2 151 188 IPR001841 -
Spst2g02676 206 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Spst2g02676 206 Pfam Zinc finger, C3HC4 type (RING finger) 150 188 - -
Spst2g02676 206 PANTHER ELFLESS, ISOFORM B 11 206 - -
Spst2g02676 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 204 IPR013083 -
Spst2g02676 206 MobiDBLite consensus disorder prediction 21 45 - -
Spst2g02676 206 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Spst2g02676 206 SUPERFAMILY RING/U-box 150 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02676 Spst-Chr2 26341294 26343192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02676 10 205 C3H Transcription Factor Family AT5G48655 51.232 1.53e-51 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02676 K22651 - gmx:100306616 308.916