Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02669 ATGGCATCAGCCTTCGTCAAGCTCGATGATTCCCCTATGTTCCAGAAACAGTTATTTTGTCTTGAAGAAACAGCTGATGAGTTAAAGGATCGGTGCCAGAAACTATATAACGGGTGTAAGAAGTTTATGACTGCTTTAGGGGAAGCATACAATGGAGAAATATCCTTTGCTGATTCATTAGAAGTATTTGGTGGTGGCCAAGATGACCCTGTTAGTGTATCAATTGGAGGGCCAGTCATAACTAAGTTTATTACCGCACTGCGTGAGCTAGCTTCTTTTAAAGAGCTTCTTCGTTCACAGGTAGAGCATGTGTTGATTGACAGGCTGACAGAGTTTATGAAAATTGATTTGCAAGATGCAAAGGATTCTCGTCGTCGTTTTGACAAAGCTGTGCATTCTTATGATCAGTCACGTGAGAAGTTTGTCTCTTTGAAGAAGAATACACCAGATGAAGTTGTTTCTGAATTAGAAGAGGATCTACAAAATTCAAAATCAACATTTGAAAAAAGTCGCTTCAATCTAGTAAACTCACTCATGAATATTGAAGCAAAAAAGAAGTATGAGTTCTTGGAGTCCATTAGTGCAATTATGGATGCTCATTTGAGATATTTTAAGCTGGGTCATGATTTACTAAGTCAAATGGAGCCCTATATTCACCAGCTTGAGAAGATATCTCCTGCACTATCTTATACTGTTACTAGGACTGTGCTAACATATGCACAGCAATCTAAAGAACTTGCTAACATTGAGCAAGATAAGCTTGCAAAACGGATTCAGGAATACAGAACACAGGCAGAGCTGGAGAATATACGAGTATCAAGCAATTTTACAGAAACCATGCCAGGCTCTGAAGGCCACGTTGTAGGTTTGAACTCATACAGAAGTTTAGATTCAGGGATGCTGGCTGCAACCAAAGGGGAGGCAACTTCAAACAATAAAACAGGGTTATCTGTTAAAACGGTCATCAAGCTCACGTGGAGATTGGAAACGAAGGGTTCTTCTGAACAAAATAGTGGAATGTTTGGTAGATTCCGTTTGAAACACAACAGGGCTGCATCACTAAATGACGATATTTTAGGTTGTACAGTTGATCTGTGCACATCGACTATAAAGATGGATGCAGAGGATACAGATCTACGACTTTGCTTCCGAATAATTTCTCCCTCCAAAACATACACACTACAGGCCGAAAATGAAGCTGATAGGATGGACTGGGTAAACAAAATTACTGGAGCTATTACATCACTTTTTAATTCACATTTTCTCCAACAGCCTCCATTTGGTAGAGTGAATTCACAAAATAAAAACTCAGCAATTGGTGCTTCTTTGTCAAGTCAATCGGAGGATGGTCAGAAATCATCGAAGGATGATGTATATTCCAAGGAAGTGGGAAGTGTCTCTAAGATTTTAAGGGGAATTCCGGGGAATGATAAATGTGCTGAGTGCAGTGCTCCTAAGCCAGAATGGGCATCTCTTAACCTTGGCATATTGCTATGTATTGAATGCTCTGGAGTGCATCGAAATCTTGGTGTTCACATCTCAAAGGTGAGATCTATAACATTAGATGTTAGGGTTTGGGAAAATACCGTTTTGGAGTTATTTGATAACTTAGGTAATGCTTATTGTAATTCTATCTGGGAGGGCTTGCTTCTACGTGATCATGAAAGAGTAGGTACATTACATCTGCCTATTAAACCTTGCGCGATAGATGCCTTCCAAATCAAGGAGAAATACATCCAAGCAAAGTACGTAGAAAGATCACTAATAATCCGAGAAGAGGATATACCCAGGAGTCCTTCAGTTTCCATAAGAATCTGGCAAGCAGTTCAGTCTGTAAATGTACGAGAAGTGTATCGCCTTATTGTTACATCAACGTCAAATGTGATTAATACAAAATATGGTGATGAGGTTCACCATGCTGCTGATGCTGAAGGGCATCAGCATGATCCTGAATCCTGTCTTAAGGTTGAAGAGACTATTGAGACTGAGAGGTGTTTCCGTGGATGGTCATTATTACATTTGGCATGTCGTACTGACAGTGCACTGATGGTTGAGTTGTTGCTCCAATTTGGTGCTGATATAAACATGTGTGACTATCACGGAAGAACTCCCTTGCACCATTGCATTACAAGTGGGAAAAATAAATTGGCAAAATTTCTATTAAGAAGGGGTGCAAGGCCGTCAGTTAAAGATGCCGAAGGGCTCACTATTCTTGAAAGAGCAATGGAGATGGGAGCAATAACTGACGAAGAGCTATTTATCATGCTTGCTGAATGCCAGTGA 2283 0.4012 MASAFVKLDDSPMFQKQLFCLEETADELKDRCQKLYNGCKKFMTALGEAYNGEISFADSLEVFGGGQDDPVSVSIGGPVITKFITALRELASFKELLRSQVEHVLIDRLTEFMKIDLQDAKDSRRRFDKAVHSYDQSREKFVSLKKNTPDEVVSELEEDLQNSKSTFEKSRFNLVNSLMNIEAKKKYEFLESISAIMDAHLRYFKLGHDLLSQMEPYIHQLEKISPALSYTVTRTVLTYAQQSKELANIEQDKLAKRIQEYRTQAELENIRVSSNFTETMPGSEGHVVGLNSYRSLDSGMLAATKGEATSNNKTGLSVKTVIKLTWRLETKGSSEQNSGMFGRFRLKHNRAASLNDDILGCTVDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSLFNSHFLQQPPFGRVNSQNKNSAIGASLSSQSEDGQKSSKDDVYSKEVGSVSKILRGIPGNDKCAECSAPKPEWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVRVWENTVLELFDNLGNAYCNSIWEGLLLRDHERVGTLHLPIKPCAIDAFQIKEKYIQAKYVERSLIIREEDIPRSPSVSIRIWQAVQSVNVREVYRLIVTSTSNVINTKYGDEVHHAADAEGHQHDPESCLKVEETIETERCFRGWSLLHLACRTDSALMVELLLQFGADINMCDYHGRTPLHHCITSGKNKLAKFLLRRGARPSVKDAEGLTILERAMEMGAITDEELFIMLAECQ 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02669 760 SUPERFAMILY Ankyrin repeat 606 755 IPR036770 -
Spst2g02669 760 Gene3D - 601 758 IPR036770 -
Spst2g02669 760 Gene3D - 343 420 IPR011993 -
Spst2g02669 760 Pfam Putative GTPase activating protein for Arf 468 588 IPR001164 GO:0005096
Spst2g02669 760 ProSiteProfiles Ankyrin repeat region circular profile. 667 698 - -
Spst2g02669 760 ProSiteProfiles PH domain profile. 380 414 IPR001849 -
Spst2g02669 760 ProSiteProfiles Ankyrin repeat region circular profile. 700 731 - -
Spst2g02669 760 ProSiteProfiles Ankyrin repeat profile. 667 699 IPR002110 GO:0005515
Spst2g02669 760 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Spst2g02669 760 SMART arf_gap_3 464 596 IPR001164 GO:0005096
Spst2g02669 760 ProSiteProfiles ARF GTPase-activating proteins domain profile. 464 596 IPR001164 GO:0005096
Spst2g02669 760 MobiDBLite consensus disorder prediction 440 460 - -
Spst2g02669 760 Pfam BAR domain of APPL family 8 223 IPR004148 GO:0005515|GO:0005737
Spst2g02669 760 SMART PH_update 321 416 IPR001849 -
Spst2g02669 760 SMART ANK_2a 700 729 IPR002110 GO:0005515
Spst2g02669 760 SMART ANK_2a 667 696 IPR002110 GO:0005515
Spst2g02669 760 Gene3D Arfaptin homology (AH) domain/BAR domain 7 268 IPR027267 -
Spst2g02669 760 SUPERFAMILY BAR/IMD domain-like 8 258 IPR027267 -
Spst2g02669 760 SUPERFAMILY PH domain-like 361 494 - -
Spst2g02669 760 CDD BAR_SFC_plant 16 217 IPR035670 -
Spst2g02669 760 Gene3D Arf GTPase activating protein 444 596 IPR038508 -
Spst2g02669 760 PANTHER CENTAURIN/ARF 3 757 IPR045258 GO:0005096
Spst2g02669 760 Coils Coil 244 264 - -
Spst2g02669 760 CDD ArfGap 468 583 - -
Spst2g02669 760 Pfam Ankyrin repeats (3 copies) 661 731 IPR002110 GO:0005515
Spst2g02669 760 SUPERFAMILY ArfGap/RecO-like zinc finger 466 588 IPR037278 -
Spst2g02669 760 PRINTS HIV Rev interacting protein signature 495 512 IPR001164 GO:0005096
Spst2g02669 760 PRINTS HIV Rev interacting protein signature 476 495 IPR001164 GO:0005096
Spst2g02669 760 PRINTS HIV Rev interacting protein signature 518 539 IPR001164 GO:0005096
Spst2g02669 760 ProSiteProfiles Ankyrin repeat profile. 700 732 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02669 Spst-Chr2 26257764 26272063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02669 476 558 C2H2 Transcription Factor Family AT4G21160 46.429 7.89e-18 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02669 K12489 - gmx:100796740 1260.74