Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02655 ATGAGTGGAAGAGTGAGTGGGAAGGTGAAATGGTTCAACGATCAGAAGGGGTTTGGGTTCATAACCCCCGACGACGGGAGCGAGGATCTCTTCGTTCACCAATCACAGATCAAATCTGACGGTTTCCGAAGTCTGGCGGAGGGAGAGTCTGTTGAGTTCGCCATTGAATCTGACGCTGACGGACGGGCCAAGGCCGTTGACGTCACCGGTCCTGACGGCGCCAGTGTCCAGGGCACCCGTCGAGGCGGTGATGGTGGTGGCCGAAGCTATGGCGGTGGACGAGGTGGTGGAAGTGGTGGCTACGGTGGCGGCTATGGTGGAGGTGGTGGCTATGGTGGTGGTGGTGGTGGACGAGGCGGTGGCGGCGGTGGTTGCTACAACTGTG 385 0.6 MSGRVSGKVKWFNDQKGFGFITPDDGSEDLFVHQSQIKSDGFRSLAEGESVEFAIESDADGRAKAVDVTGPDGASVQGTRRGGDGGGRSYGGGRGGGSGGYGGGYGGGGGYGGGGGGRGGGGGGCYNC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02655 128 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Spst2g02655 128 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Spst2g02655 128 Gene3D - 1 82 IPR012340 -
Spst2g02655 128 MobiDBLite consensus disorder prediction 64 123 - -
Spst2g02655 128 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Spst2g02655 128 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Spst2g02655 128 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Spst2g02655 128 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 128 - -
Spst2g02655 128 SUPERFAMILY Nucleic acid-binding proteins 4 70 IPR012340 -
Spst2g02655 128 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Spst2g02655 128 SMART csp_8 6 71 IPR011129 GO:0003676
Spst2g02655 128 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Spst2g02655 128 FunFam Cold shock protein 1 2 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02655 Spst-Chr2 26148915 26149299 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Spst2g02655 CSD 1.2e-27 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02655 - - gmx:100799708 157.532