Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02642 ATGGGAAGATCCCCTTGCTGTGAGAAAGCTCACACAAACAAAGGTGCATGGACCAAAGAAGAAGATGACAGACTTATATCTTACATTCGAGCTCACGGTGAGGGCTGCTGGCGCTCCCTCCCAAAAGCCGCCGGCCTCCTCCGCTGCGGCAAGAGTTGCCGCCTCCGCTGGATCAACTACCTCCGCCCCGACCTCAAACGCGGCAACTTCACCGAAGAAGAGGACGAACTCATCATCAAACTTCACAGCCTCCTCGGTAACAAGTGGTCTTTGATAGCTGGAAGATTGCCGGGGAGAACGGACAACGAAATAAAGAACTATTGGAACACTCACATAAGAAGGAAGCTTTTGAACAGAGGAATCGACCCTGCAACTCATAGACCTCTAAACGAAGCTGCTTCTGCTGCAACTGTTGCAACGGTTGCAACTACCACTAATATATCTTTTGGTAAACAAGAACCAGAGACAAGTTCGAGTAACGGAAGCGTCGTTAAAGGGTCCATCATAGAACGCTGCCCTGACTTGAACCTTGAGTTAACCATTAGTCCTCCTCGCCAACAACAACCTCAGAAGAATCTTTGCTTCGTTTGCAGTTTGGGTTTGCACAACAGCAAGGATTGCAGCTGCAACGTCGCCAACGCCGTCACTGCCAACAGCTCCGCTCCTCCTGCTTCTGCTGCTGCTTATGATTTCTTGGGCTTGAAAACCAACGGTGTTTGGGATTGCACCAGCTTGGAGATGAAATGA 747 0.4993 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEAASAATVATVATTTNISFGKQEPETSSSNGSVVKGSIIERCPDLNLELTISPPRQQQPQKNLCFVCSLGLHNSKDCSCNVANAVTANSSAPPASAAAYDFLGLKTNGVWDCTSLEMK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02642 248 CDD SANT 69 112 IPR001005 -
Spst2g02642 248 CDD SANT 16 61 IPR001005 -
Spst2g02642 248 FunFam Myb transcription factor 68 137 - -
Spst2g02642 248 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst2g02642 248 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Spst2g02642 248 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Spst2g02642 248 SMART sant 66 114 IPR001005 -
Spst2g02642 248 SMART sant 13 63 IPR001005 -
Spst2g02642 248 Gene3D - 14 66 - -
Spst2g02642 248 Gene3D - 68 136 - -
Spst2g02642 248 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst2g02642 248 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 156 - -
Spst2g02642 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst2g02642 248 FunFam MYB-related transcription factor 13 66 - -
Spst2g02642 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst2g02642 248 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02642 Spst-Chr2 26002047 26002913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02642 1 248 MYB Transcription Factor Family AT4G34990 59.489 2.82e-107 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst2g02642 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02642 K09422 - gmx:778030 438.728