Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02585 ATGGAAGTTGCGGCGGCCAAAGCGTTGAAACCGAGCTTGCGGACAGAGTTCGTTTTCCCGCAAGCAATCTGCGACGAGATTTTGTGTTTCAACGCGAACAACATTGTCGTCGCCGAGGATTTCTCTGTCGACGACCTTCTTGACTTTTCTAACGGCGAATTCCAACTTGGAAAGGAATTCGATGTCTACGAGGAAGAGGACGACGAGGAAAAAGACAGCACATCCGGTTCCTCGCAGGACCGAACCGAAGACGACAGCAATTCCAATTCCACAGCCGCTGGTGGCGGCGGGGACTCCGACTCGGTCTTCGCCGGCGAATTGTTGGTTCCGGCGGATGATGTGGCGGACCTGGAGTGGGTTTCTCACTTTGTAGACGATTCTCTCCCTGAGCTATCTCTATTGTACCCAGTTCGTTCCGAACAAACAAGTGTATGGGCCGAACCGGAACCTATACTGGGCCGGGCCCAAACCGCTTCAGCGACCCCCAGAAGGCGGAGAACCGGAAAGAGTAGAAAGCCCAACGCTCGTGTATTGTCTTTTACGGTGTCGCCGCCGTCTTTGTGTTCTTCGGTTTTATCTGGCTCCGTTGAGTTTAACGAGCCGGCAGTTAAAAAGCAGAGGAAAAAGGCCGAGGCCCAAAGTGGGGCCCAGTTTCTGCGACGGTGCAGCCACTGCATGGTGCAGAAAACGCCGCAGTGGAGGACCGGCCCACTGGGGCCCAAAACACTCTGCAACGCTTGTGGGGTTCGGTTCAAGTCAGGTCGGCTTTTCCCAGAGTATAGACCGGCCTGTAGCCCAACTTTCTCCGGCGATATTCACTCAAATAGCCATCGTAAGGTGTTGGAAATGAGGCGGAGAAAGGAGATCCCCGAACCGGAAACCGGTTCAGACCGGACTCAAATGGTCCCAAGTTGTTGA 918 0.5447 MEVAAAKALKPSLRTEFVFPQAICDEILCFNANNIVVAEDFSVDDLLDFSNGEFQLGKEFDVYEEEDDEEKDSTSGSSQDRTEDDSNSNSTAAGGGGDSDSVFAGELLVPADDVADLEWVSHFVDDSLPELSLLYPVRSEQTSVWAEPEPILGRAQTASATPRRRRTGKSRKPNARVLSFTVSPPSLCSSVLSGSVEFNEPAVKKQRKKAEAQSGAQFLRRCSHCMVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGDIHSNSHRKVLEMRRRKEIPEPETGSDRTQMVPSC 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02585 305 PIRSF Txn_fac_GATA_plant 1 304 IPR016679 GO:0003677|GO:0005634|GO:0045893
Spst2g02585 305 Pfam GATA zinc finger 222 255 IPR000679 GO:0006355|GO:0043565
Spst2g02585 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 216 277 - -
Spst2g02585 305 MobiDBLite consensus disorder prediction 286 305 - -
Spst2g02585 305 SMART GATA_3 216 270 IPR000679 GO:0006355|GO:0043565
Spst2g02585 305 ProSitePatterns GATA-type zinc finger domain. 222 247 IPR000679 GO:0006355|GO:0043565
Spst2g02585 305 PANTHER GATA TRANSCRIPTION FACTOR 38 296 - -
Spst2g02585 305 CDD ZnF_GATA 221 278 IPR000679 GO:0006355|GO:0043565
Spst2g02585 305 MobiDBLite consensus disorder prediction 60 99 - -
Spst2g02585 305 MobiDBLite consensus disorder prediction 80 96 - -
Spst2g02585 305 ProSiteProfiles GATA-type zinc finger domain profile. 220 252 IPR000679 GO:0006355|GO:0043565
Spst2g02585 305 Gene3D - 216 289 IPR013088 GO:0006355|GO:0008270
Spst2g02585 305 FunFam GATA transcription factor 210 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02585 Spst-Chr2 25599826 25600892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02585 40 287 C2C2-Gata Transcription Factor Family AT4G36240 45.098 8.46e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst2g02585 GATA 1.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02585 - - gmx:100776188 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02585 2 25599826 25600892 Spst2g02585 2 25599826 25600892 ECH
Spst9g00109 9 822684 823679 Spst2g02585 2 25599826 25600892 ECH