Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02537 ATGTTGCATTGTCTCAACGGTTCGGGGAATCTAGGAGCGAGTTGTTCGGACATGACAGTGTTGGAAAGACAAACGAAGTGGCAACAACAACAACACCATCACGAGAATCACCAACCTTACATTTCCGCAACGGAGTTTCACGTTAACCTTGTTTTCTCTTCTTCTTCTTCCAATAATCATCCTCAGAGTCAGGGCTCGGTCATGGCGCGTGATGGTTCCGCGCTTGGTGAAGTGTTGGCTCATTCTGTGAATCCCGACCCGGGTTTCTGCACCGAATTGGACGCTGGATTCGGATCCTCTTCTGGTTTTTTACCCAAGGAAAACATTAAGAAGAGGAAGGCGCAGAATTCCAAGGTTGCTGCGGAGAGTGATAACAAGGACAAGAGAGTCAAGATGAGTGGGGAGGAAGGAGAATCCAGAGTGACAAACCAAACCAGCAACAAAAATGGCAAATCCAACGCAAATAAGAACAACAGAGAAACCTCTGCGGATTCTTCCAAGGATAATTCGAAAATCTCCGAGGTTCAGAACCAGAAGTCTGAGTACATTCATGTCCGAGCGCGTCGTGGTCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTTAGGAGGGAGAAGATTAGCGAGAGAATGAAGTATTTGCAAGATTTGGTTCCGGGTTGCAACAAAATTGCAGGCAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAACGACAAGTTGAGTTCTTGTCGATGAAATTAGCTGCTGTAAATCCAAGGCTTGACTTCAACATTGAAGAACTGTTTGCCAAAGAGGTGTTTCCTTCATGTGCTCAAGGATTACCAAACATTGGGATGCCATCAGATATGAGTATGTGTAACACTCCCTCGTATCTTCAGTTCAATTCAACACAGCAACTTGTATCGTGTTGTGGTGGATTAATAAATAACGCGGGGATGAGCCCTCCGAATATGGGACTTCGAAGGAACATTAGTACTACACCTGTACCCTTGCCCGAAATGTCTCTTGACTCGTCCTGCTTCGCTCAAATTCTACCCTCCTCAAATTGGGAAGGTGATTTCCAAAGCCTTTACAATGTTGCTTTTGATCAAGGGCGAACAGCATCCTTTCCTTCTCAGCCATTTACAGGTCTAGTTGAAAGTAGCAATCTAAAGATGGAGATGTAA 1182 0.4467 MLHCLNGSGNLGASCSDMTVLERQTKWQQQQHHHENHQPYISATEFHVNLVFSSSSSNNHPQSQGSVMARDGSALGEVLAHSVNPDPGFCTELDAGFGSSSGFLPKENIKKRKAQNSKVAAESDNKDKRVKMSGEEGESRVTNQTSNKNGKSNANKNNRETSADSSKDNSKISEVQNQKSEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIEELFAKEVFPSCAQGLPNIGMPSDMSMCNTPSYLQFNSTQQLVSCCGGLINNAGMSPPNMGLRRNISTTPVPLPEMSLDSSCFAQILPSSNWEGDFQSLYNVAFDQGRTASFPSQPFTGLVESSNLKMEM 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02537 393 Pfam Helix-loop-helix DNA-binding domain 195 242 IPR011598 GO:0046983
Spst2g02537 393 Gene3D - 188 262 IPR036638 GO:0046983
Spst2g02537 393 MobiDBLite consensus disorder prediction 137 160 - -
Spst2g02537 393 FunFam Basic helix-loop-helix transcription factor 188 260 - -
Spst2g02537 393 MobiDBLite consensus disorder prediction 181 199 - -
Spst2g02537 393 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 77 293 IPR024097 GO:0006355
Spst2g02537 393 MobiDBLite consensus disorder prediction 101 199 - -
Spst2g02537 393 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 241 IPR011598 GO:0046983
Spst2g02537 393 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 260 IPR036638 GO:0046983
Spst2g02537 393 SMART finulus 197 247 IPR011598 GO:0046983
Spst2g02537 393 MobiDBLite consensus disorder prediction 106 136 - -
Spst2g02537 393 CDD bHLH_AtBPE_like 181 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02537 Spst-Chr2 25023125 25025344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02537 108 392 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 44.710 1.74e-58 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst2g02537 HLH 3.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02537 - - vun:114168601 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02537 2 25023125 25025344 Spst2g02537 2 25023125 25025344 ECH
Spst2g02537 2 25023125 25025344 Spst2g00791 2 6679009 6680359 ECH