Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02525 ATGGCCTCAAGCTCTCTCAGCAAGCAAAAGCTTTCTGACTCCTCTTGGACACCAAAACAGAACAAGCTGTTTGAAAAAGCACTTGCAAAATATGACAAGGATACCCCTGACCGCTGGCAGAATGTGGCCAAAGCAGTAGGTGGAAAATCTCCAGATGAGGTTAAGAGACACTATGAAATCCTCTTGGAGGATCTCAGACACATAGAGTCTGGCCGTGTTCCTCTCCCCAAATACAAGTCCACAGGAAGCAGCACCAATGTTGATGATGAAGAGAGGCTTCTGAAGTATCTTAAGCTGAATTAA 303 0.4521 MASSSLSKQKLSDSSWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGGKSPDEVKRHYEILLEDLRHIESGRVPLPKYKSTGSSTNVDDEERLLKYLKLN 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02525 100 CDD SANT 15 62 IPR001005 -
Spst2g02525 100 Gene3D - 7 75 - -
Spst2g02525 100 SMART sant 12 64 IPR001005 -
Spst2g02525 100 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Spst2g02525 100 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Spst2g02525 100 FunFam Transcription factor SRM1 8 75 - -
Spst2g02525 100 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Spst2g02525 100 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Spst2g02525 100 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 87 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02525 Spst-Chr2 24827218 24828443 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst2g02525 Myb_DNA-binding 1.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02525 - - gmx:100798314 191.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02525 2 24827218 24828443 Spst2g02525 2 24827218 24828443 ECH
Spst2g02525 2 24827218 24828443 Spst3g03884 3 88859999 88870304 ECH