Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02522 ATGGCCTCTGCGGATGTTGAATACCGATGCTTTGTTGGTGGACTCGCATGGGCTACCGACAATGATGGGCTTGAGAAGGCCTTCTCTCTTTACGGTGACATCGTTGAATCGAAGATTATCAACGATCGTGAGACTGGAAGATCCAGGGGTTTCGGATTCGTGACCTTCGCGTCTGAGCAGTCAATGAAAGATGCGATCCAAGGGATGAACGGCCAGAACCTTGACGGCCGTAACATTACTGTGAACCAAGCTCAGTCCCGCGGTGGATATAGTCGAGGTGGAGGTGGCGGTGGATACGGCAGCGGAGGTTACGGTGGTCGTCGTGAAGGAGGATACAACCGTAATGGTGGATCACGCTTTTCTCGTCGTGGCGGTCATGAAACAGTTTGGTGA 393 0.5267 MASADVEYRCFVGGLAWATDNDGLEKAFSLYGDIVESKIINDRETGRSRGFGFVTFASEQSMKDAIQGMNGQNLDGRNITVNQAQSRGGYSRGGGGGGYGSGGYGGRREGGYNRNGGSRFSRRGGHETVW 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02522 130 FunFam Glycine-rich RNA-binding protein GRP1A 2 118 - -
Spst2g02522 130 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Spst2g02522 130 SUPERFAMILY RNA-binding domain, RBD 8 116 IPR035979 GO:0003676
Spst2g02522 130 SMART rrm1_1 9 82 IPR000504 GO:0003723
Spst2g02522 130 Gene3D - 2 127 IPR012677 -
Spst2g02522 130 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 5 120 - -
Spst2g02522 130 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Spst2g02522 130 MobiDBLite consensus disorder prediction 82 130 - -
Spst2g02522 130 CDD RRM2_NsCP33_like 9 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02522 Spst-Chr2 24817105 24817764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02522 10 87 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 2.00e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02522 - K13195 ccaj:109800369 164.466