Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02484 ATGGAGGATTACGCGAGCAGCGACGAGGATTACCATTACGACGACTCCGATCAAGATGACTCCGTCGAGGCCTACGAAAACGACGAGGATTACGCGTTGCTCTCTTCCAAGGGTCCCACTACTAAGGTGATTACAAAGGAATCACTGCTGATTGCACAGAAAGAGGATTTGCGCAGAGTGATGGAGATGCTATCGGTAAGAGAACAACATGCTCGTACCCTACTAATTTATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTCTATGTAGACAAGGGAAAAGCATTTCTCTTTGGTGAAGCTGGTGTTAGTGTGGATGAACATCGTGACTCAGACTCATCAGCTCCTTCTACAGTAATGTGCTACATCTGCATGGAGGATGTTCCTACGGTCGAAACAACAAAAATGGACTGTGGCCATTGCTTTTGCAACTCCTGTTGGATTGAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGCAAACGCATTAGATGCATGGAACACAAGTGCAATTCCATATGTGACGAAGCTGTTGTAAGAACTCTACTCAGTAGAAATCACCCTGATATGGCAGAGAAATACGAACGCATACTGCTTGAATCTTACATTGAAGACAATAAAAGAGTTAAATGGTGTCCAAGTACACCACATTGTGGGAATGCAATTCGTGTTGAGGATGATGAATTGTGTGAGGTAGAATGTTCATGTGGTTTACAGTTTTGTTTTAGGTGCTTGTCAGAAGCACACTCACCTTGTTCATGCCTGATGTGGGAGCTTTGGGCTAAGAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATAACTGTTCATACAAAACCATGCCCAAAGTGTCACAAACCGGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGTCAAGCATTTTGTTGGTTATGCGGTGGAGCTACTGGTCGAGAGCATACTTGGTCAAGTATAGCTGGTCATAGCTGCGGTCGCTATAAAGAACAAGAAAAAACAGCTGAGCGAGCAAAGAGGGATCTATATCGATATATGCACTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGATTGAAAGCAAACTGAAAGAAACTATACAAGGGAAGATTGCCATTTCAGAAGAAAAAGATTCTACACTCAGGGATTATAGCTGGGTAAATAATGGGCTTTCCAGACTTTTCAGATCTAGGAGAGTCCTATCCTATTCGTATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGAAGAAATGACAGAAGCTCAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGCTTGAGGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTTCAGATGAAAAGGTTGTGGAGATAAGGATGCAGATTCTTAACCTCTCAACAATTATTGATAAGCTTTGTCAAAAAATGTATGAGTGCATCGAGAATGATTTATTGGGTTCTCTACATCTTGGCATTCATAGTATTGCTCCATACAAGTCAAAGGGCATCGAGAGGGCTTCAGAACTTTCAGTTTGCTGGAACAACAAAGTCAATACTGGTGGAACAGCAGAACTTGATCGACCTTCTGGATCAGGGAGTTCAGATGAGAATGGATGCTCTTCTCGTAAACGTGCAAGAAAAGATGGTCTTGGTGGTGGTTTTTTTGATCTAAACTTGCCAGCAGAGTTTGTAGACAGAAATTGA 1740 0.4144 MEDYASSDEDYHYDDSDQDDSVEAYENDEDYALLSSKGPTTKVITKESLLIAQKEDLRRVMEMLSVREQHARTLLIYHRWDVEKLFAVYVDKGKAFLFGEAGVSVDEHRDSDSSAPSTVMCYICMEDVPTVETTKMDCGHCFCNSCWIEHFIVKINEGQSKRIRCMEHKCNSICDEAVVRTLLSRNHPDMAEKYERILLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGLQFCFRCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKIESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTEAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDEKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLHLGIHSIAPYKSKGIERASELSVCWNNKVNTGGTAELDRPSGSGSSDENGCSSRKRARKDGLGGGFFDLNLPAEFVDRN 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02484 579 FunFam RBR-type E3 ubiquitin transferase 115 206 - -
Spst2g02484 579 CDD RING-HC_RBR_TRIAD1 119 172 - -
Spst2g02484 579 MobiDBLite consensus disorder prediction 1 22 - -
Spst2g02484 579 ProSiteProfiles Zinc finger RING-type profile. 121 169 IPR001841 -
Spst2g02484 579 FunFam RBR-type E3 ubiquitin transferase 250 497 - -
Spst2g02484 579 Gene3D - 250 497 - -
Spst2g02484 579 CDD Rcat_RBR_ARI1-like 275 328 - -
Spst2g02484 579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 207 IPR013083 -
Spst2g02484 579 ProSiteProfiles TRIAD supradomain profile. 117 331 IPR044066 -
Spst2g02484 579 SUPERFAMILY RING/U-box 262 319 - -
Spst2g02484 579 MobiDBLite consensus disorder prediction 534 550 - -
Spst2g02484 579 CDD BRcat_RBR_ANKIB1 199 263 - -
Spst2g02484 579 SMART ibrneu5 192 254 IPR002867 GO:0008270
Spst2g02484 579 SMART ibrneu5 262 327 IPR002867 GO:0008270
Spst2g02484 579 SUPERFAMILY RING/U-box 192 260 - -
Spst2g02484 579 SUPERFAMILY RING/U-box 117 204 - -
Spst2g02484 579 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 48 398 IPR031127 GO:0004842|GO:0016567
Spst2g02484 579 MobiDBLite consensus disorder prediction 534 556 - -
Spst2g02484 579 Pfam Ariadne domain 331 579 IPR045840 -
Spst2g02484 579 Pfam IBR domain, a half RING-finger domain 192 254 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02484 Spst-Chr2 24427677 24430878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02484 61 543 ARIADNE family AT2G16090 70.637 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02484 K11968 - gmx:100783343 1082.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02484 2 24427677 24430878 Spst2g02484 2 24427677 24430878 ECH