Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02471 ATGATGCCTCCTTCTCAGCCACCCCATTGGGCCCCATCTCCATCTCCATCTCCAACACCAATACTCAACAAATCTTTTCTACCACCGCCGTCAAACTCGCCGGCGGTTGACTTCAGTCCCCCCTTGATAGCAATGGTCGTCGTCGTCGCGGCAGCCTTTCTAGTCGTCACCTACTCCCGCCTCATCGCGCGCCACCTCAGGCCACCAATCCACCGCCTCATCCTGCGCTTCCGGAGGCGGCGGCGCTTTCCCCCGTCATCCGTTGGCGACCTCGAGTCCCTACCCTACGACTCTCCTTTTGATGGCCCACGCGTGTTCTCTCCCTACGGTTTAGACGAAACTGTGATTAAGACGATTCCGTTTTCTATTTACACTGCGAAATACGACGCGCGTTTCGAGGAGTCTCGCAACGACTGCGCCGTTTGCTTGCTTGAATTCGAAGACGAAGACTACGTGAGAACGCTTCCCGTTTGTTCACACACTTTCCACGTGGACTGCATCGATGCGTGGCTTCGCTCGCACGCTAACTGCCCTCTCTGCCGCGCTGGAGTTCTCTGCGCCGATTCGCCTTTCACTCCGATGATGGCGGCACGAATCCGACCAAGCCTCGACGACGAAACAATCCTCCACCGCATAAGTATGGACCCTCTACTCGATCCGCCGCTGCCTGCAGCAATCTCCGCTGTGCCAGAGATAACACCATGCATAGAGGAGCAATCGCCGAGGAGGAACCAGAATCACGCGAACGTTAATTCAGAGGATTGTTTCGGGGATTTTCTGCTGAAGAGGTCTTATTCGTTTGGGTTTGAACGGAGTGTCGCGTCGGAGAGGATGGTGATGGAACCCGCCACGGCGTCGCCGTGGCGGTACAGGAGAGGGAGTAATAGTTTCTGGAGCAAGAGGCCATCTCCGTTTGGGTCTTTGGGGAAACCAAGGGTGTTTTCGTTTCGGTATTATAGAGGGATGAAATCACCGTTCTTCCGGCGGAGAGGATTTTTCCCGTTGTCGGAGTCGAGCGTGAGGTACGGCGGCGGAAGCTCGTCGCGGCGGAGCAAATCGATTGCGAGTCCGATGTTTCTGCGTTCGTCGGGGTTGGCCGCGGCGGCGTTCTCGTCAAGCCGGCTGAGGTGCGGGGATCCCGAGGCACTGCTGTCGCCGGAGAGGTTTAACCGGAGGTGA 1179 0.5717 MMPPSQPPHWAPSPSPSPTPILNKSFLPPPSNSPAVDFSPPLIAMVVVVAAAFLVVTYSRLIARHLRPPIHRLILRFRRRRRFPPSSVGDLESLPYDSPFDGPRVFSPYGLDETVIKTIPFSIYTAKYDARFEESRNDCAVCLLEFEDEDYVRTLPVCSHTFHVDCIDAWLRSHANCPLCRAGVLCADSPFTPMMAARIRPSLDDETILHRISMDPLLDPPLPAAISAVPEITPCIEEQSPRRNQNHANVNSEDCFGDFLLKRSYSFGFERSVASERMVMEPATASPWRYRRGSNSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYGGGSSSRRSKSIASPMFLRSSGLAAAAFSSSRLRCGDPEALLSPERFNRR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02471 392 CDD RING-H2_EL5-like 138 181 - -
Spst2g02471 392 MobiDBLite consensus disorder prediction 1 26 - -
Spst2g02471 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 185 IPR013083 -
Spst2g02471 392 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Spst2g02471 392 PANTHER RING-H2 FINGER PROTEIN ATL16 26 206 IPR044600 GO:0016567|GO:0016740
Spst2g02471 392 SMART ring_2 139 180 IPR001841 -
Spst2g02471 392 FunFam RING-H2 finger protein ATL65 104 185 - -
Spst2g02471 392 Pfam Ring finger domain 137 181 IPR001841 -
Spst2g02471 392 SUPERFAMILY RING/U-box 124 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02471 Spst-Chr2 24358702 24359880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02471 31 392 C3H Transcription Factor Family AT3G18930 50.882 8.40e-96 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02471 - K19041 gmx:100806115 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02471 2 24358702 24359880 Spst2g02471 2 24358702 24359880 ECH