Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02456 ATGCTTTGGTTTTTCTGGCTTTTGATATACTCAGAAAATGACGCACCCTTCTTTCCACAAGCTTCTTCTACCCTCCACTCTCCAACCCAACCAACTGGTACCTTAATTTTCCCTCATTCTTCCACTTTTTTTTGTGGATTTTTTGTTTTACTTTTTGGAGTTGGTATTGTTATTTTTATGGTGTTTGAGGAATTTGAGAGAGTGAGAAAAGCAAGCTGGTTGAGTGATAGTGAAGAAAAATCAGAAAATTTCTTTTGGGGACAAGGTCTTGATATTTTAGAAGACACAGTTCTTTGTATTATTGACTCACTCGAAATTAGTAACATCATTGTATTACAAAAATTACCAATATTCGGATATGAATTGCAGAGGCTTCCAGATGATTTTATGAGGACATATGGGGGTCAACTTTCTCCAATTGTTACCCTCTCTGTTCCTGATGGTAGTGTCTGGCGTGTAGGATTGAAAAAGGCAGATAACAAGTATTGGTTCCTTGATGGTTGGCAAGAGTTTGTTCAACACTATTCCATTGGCGTTGGATACTTGTTGGCTTTCAGATACGAAGGAAAGTCATCTTTCAATGTTCATATTTTTAATTTGGCAACTTCTGAGATAAACTATCAATCAGCCATGCGATGCAGTAACGAAGGGCCTCACTTTGCAAATCTTCTTAAATTTTTTGAAGAAATGGATGATGGAGATTCCATTGAAATCCTGGATTCATCACCCTCCCACCTTGCTCCCAGTTCATTGAAAAATAAAGTTCATGCAGGATCAGTAGATAAAATGTCTTCTGGAAAGAGTTACACACCTCCAGCATTGCAGAATTTGTTCAATGGATCTAAATTAAATAGCATAAACTGGGGAGAGGGTGGTAATGCCCATTGTTCAAAAAGTGCCAATTCACTAGATAATCGATTGACCAGAGACATAGGAGTTCAATTTAATGCAGTAGAGTTTAAAAGATCAACTGAAGAATTGAAATTACGTGCTTCCATGGAGGAAAGGATGAAAAAAATTGCAAGAAAGAAGCGGAAATCAGGTCTTATAGTAGTCTCTTTAACTAATTTTTCTTTCTATGATCTGGTTATCTACAAATTGTACTTTAAGATCAATACAATTTGTGGAAGTGCAGATGGCCAGGAACCCTCTGCTGAGCACGAAGAGGAAGTCGAAATGCGCTTTAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACCGTGACAGCAGAAGAAAGAGAGAGGGCCATCACTGCAGCCAAAGCATTTGAACCACCTAATCCTTTCTGTAGGGTTGTTCTGCGGCCCTCATACCTATATAGGGGATGCATAATGTATCTGCCATCATGCTTTGCAGAAAAACACTTGAATGGAGTTTCAGGGTTTATCAAACTTCAGATCTCTAATGGGAGACAGTGGCCGGTTCGGTGCCTTTATAGGGGAGGTAGAGCCAAGTTAAGCCAAGGGTGGTTTGAATTTTCACTAGAGAACAATTTAGGGGAAGGTGATGTATGTGTTTTTGAGCTTCTTAGAATGAAAGAAGTGGTGCTGCAAGTTACTGTGTTTCGCATTAATGAGGATGATGTGGGATTGCTGAGTCCTCCTCCATTGCAGCAGAATCAAACCATGAGCTCAGTTAAACTGCTGAACACTCCCTTGCAGCAGCAACACCACCTTACTTCAACTAAAATGGTTGTGCAGGGAGCAAAACAATTTCATTGTTTTGAATATGAAAATGCTAAATTTCCAGAAATTTTGGATAGCTCGATGACTGGTGCAGAGAAATACCCTGACTTCTTCAAAGTCTTCCTTCGAGATCAACACCACGAAAGAATGCTTATTCCAAATGCTTTTGTGAAGTTGCCAGGGTTACTGGGAAGGATCCCTGAGGATATTCTCCTCAGGAATGGTAGTGGGAGAGTGTGGCATGTTAAAACACGTTTTTTTGGAGACAAATTATATTTCGATGATGGGTGGAAAATTTTTCATGAAGAAAACTGCTTAGAAAATGCAGATTTTCTAGTATTTAGATATGATGGGGTTAGTGAGTTCAGGGTCACAATCCTTGAAATATCAACACAGTGTGAGAAAACTCTGGTAAAGATGGAGGAGGAGGAGAATGATGAAGAGCAAGCACCAGCACAAGAAATTGAGGAGAAAGTGATAATAACACAGGAGGAACCAACTGAGGACTGTGACATGGAGGACGAGGAAGACAGCCAAGATCAGGACTATGATGACGACAATGACGATAGTGATTTTCATGATGATGATGATGATGAGAACACGGAGATGGAAGAAGATAGTGAAGAAGAAAACGGTGTGAGTCCTGTGGGATACACGAGTCAAAGTTATCGCAAAGCTTGCAGAAGGGACACCGGATCAAGTTCCTACCTCCGGACTGAAGACCCTCTTAAAGAAGATGAATTTGATCCAGACATGTGCATTCAGCCAGAGAATAATTTTTTTGAAGCAAAACTCTACAGAAGTAGACCCAACGAATTGCATATTCCAGGAATTGCCATTCAAGACTTTTCCCTTACTTTTCCTGAAAAGATTACCCTTAAATGTTGTCAACACTGCCAGCGTAAGGACATTCAAAGAAACAAATTGCAAATGTATCATCTCAACTTGGCACAACAGGCACCCATCCGCAAAAGATATTTGGAAGTGACAGGAAAAGTGTGTAGGTGGCAAGATGATAGAATATGTATCAAGGGTTGGGCAAACTTCAGTAGAAGGAACAAGATAAAAAATAATGATATATGCATCTGCGAAGTTATATCAGAGGAAGACCAAGTAGTAAGAACACTTCTGGTGCACGTTATTGGTGCTAGGAGGGAATAA 2847 0.3969 MLWFFWLLIYSENDAPFFPQASSTLHSPTQPTGTLIFPHSSTFFCGFFVLLFGVGIVIFMVFEEFERVRKASWLSDSEEKSENFFWGQGLDILEDTVLCIIDSLEISNIIVLQKLPIFGYELQRLPDDFMRTYGGQLSPIVTLSVPDGSVWRVGLKKADNKYWFLDGWQEFVQHYSIGVGYLLAFRYEGKSSFNVHIFNLATSEINYQSAMRCSNEGPHFANLLKFFEEMDDGDSIEILDSSPSHLAPSSLKNKVHAGSVDKMSSGKSYTPPALQNLFNGSKLNSINWGEGGNAHCSKSANSLDNRLTRDIGVQFNAVEFKRSTEELKLRASMEERMKKIARKKRKSGLIVVSLTNFSFYDLVIYKLYFKINTICGSADGQEPSAEHEEEVEMRFRFYESASARKRTVTAEERERAITAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTVFRINEDDVGLLSPPPLQQNQTMSSVKLLNTPLQQQHHLTSTKMVVQGAKQFHCFEYENAKFPEILDSSMTGAEKYPDFFKVFLRDQHHERMLIPNAFVKLPGLLGRIPEDILLRNGSGRVWHVKTRFFGDKLYFDDGWKIFHEENCLENADFLVFRYDGVSEFRVTILEISTQCEKTLVKMEEEENDEEQAPAQEIEEKVIITQEEPTEDCDMEDEEDSQDQDYDDDNDDSDFHDDDDDENTEMEEDSEEENGVSPVGYTSQSYRKACRRDTGSSSYLRTEDPLKEDEFDPDMCIQPENNFFEAKLYRSRPNELHIPGIAIQDFSLTFPEKITLKCCQHCQRKDIQRNKLQMYHLNLAQQAPIRKRYLEVTGKVCRWQDDRICIKGWANFSRRNKIKNNDICICEVISEEDQVVRTLLVHVIGARRE 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02456 948 SMART B3_2 599 692 IPR003340 GO:0003677
Spst2g02456 948 SMART B3_2 430 525 IPR003340 GO:0003677
Spst2g02456 948 SMART B3_2 112 201 IPR003340 GO:0003677
Spst2g02456 948 ProSiteProfiles B3 DNA-binding domain profile. 430 525 IPR003340 GO:0003677
Spst2g02456 948 SUPERFAMILY DNA-binding pseudobarrel domain 892 944 IPR015300 -
Spst2g02456 948 MobiDBLite consensus disorder prediction 728 773 - -
Spst2g02456 948 MobiDBLite consensus disorder prediction 775 800 - -
Spst2g02456 948 ProSiteProfiles B3 DNA-binding domain profile. 108 201 IPR003340 GO:0003677
Spst2g02456 948 MobiDBLite consensus disorder prediction 702 812 - -
Spst2g02456 948 ProSiteProfiles B3 DNA-binding domain profile. 597 692 IPR003340 GO:0003677
Spst2g02456 948 SUPERFAMILY DNA-binding pseudobarrel domain 595 691 IPR015300 -
Spst2g02456 948 Pfam B3 DNA binding domain 123 198 IPR003340 GO:0003677
Spst2g02456 948 Pfam B3 DNA binding domain 433 523 IPR003340 GO:0003677
Spst2g02456 948 Pfam B3 DNA binding domain 599 688 IPR003340 GO:0003677
Spst2g02456 948 SUPERFAMILY DNA-binding pseudobarrel domain 122 199 IPR015300 -
Spst2g02456 948 PANTHER B3 DOMAIN-CONTAINING 108 517 - -
Spst2g02456 948 CDD B3_DNA 428 523 IPR003340 GO:0003677
Spst2g02456 948 SUPERFAMILY DNA-binding pseudobarrel domain 423 525 IPR015300 -
Spst2g02456 948 Gene3D - 590 694 IPR015300 -
Spst2g02456 948 Gene3D - 112 201 IPR015300 -
Spst2g02456 948 CDD B3_DNA 597 689 IPR003340 GO:0003677
Spst2g02456 948 Gene3D - 407 527 IPR015300 -
Spst2g02456 948 Gene3D - 806 945 IPR015300 -
Spst2g02456 948 CDD B3_DNA 124 199 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02456 Spst-Chr2 24204840 24213259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02456 389 526 REM Transcription Factor Family AT1G49480 75.362 4.89e-69 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst2g02456 B3 8.3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02456 - - var:108340232 718.768