Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02455 ATGGTCCCCGTGACAATGAGAGACTTTTCATTCTATCAAAAAGCTTTAATCATACAAGGAAATGGCAGGGAAATGTGGCAGATGGATTATCATCACGGCAACCCAGTGTTCTTCATTATCATCAACAACACCAAGTTACAGAAAGTGCCTGAGGAGTTTCTGAAGCATTTGAATGAAGATTTGCCAAATGCAGTTCTTATTGGTCCTTCTGGTGATAATTGGCAAGTAACTATTTTGAAGGAAGGAAATAACTTGTTTATGCAAAATGGTTGGCCACAATTTCTGACAGACAACTCAGTAGTGCTTGATGATTTCTTGCTTTTTACATATCATGGAGGGAACTGCTTCCATGTTCAAATTTTTTGTAAGAGTGGATTGGAGAGGCTATGCCTCAAAGAAACAAGACAAGAACAAGTTGTCATCCCAAGTTTGGTGAGGACTAAGAAGAGTGCACAGAGAGTACCATTTGCAAGTTCATTCCTCCACAGATCCAGGTCTCGTCAAAAAGATCTGTCTCTCCGCAACAAGTTTTCACTTACTAAGGGTTTTTCAAAGCTAAAGAGTTCAATTAAAATTGAAAACTCAGAAGCATGCAACTTGGCAGACACTTTTACCTCTCGCAATCCTCATTGGAAGCACCTCATGACTAAATGCAATGTGGAAGATCACTGCACATTGCCAATTGCTACTGAATTTGCTAGGAAACATATCCCTGAAGCAGTGAAACAGATCATTCTTTGGAACTCAGAAGGCAAATTTTGGGAAGTGGTAGTGACTTGGTTTGGATGTCAAAACAAGAGGTATACTCGATTTACAACAGGATGGGGAAGATTCGTTCGTGATAACAGACTCATGAGAGGTGATACTTGCATATTTGAACTTGAAGATGAAAACCATTTGAGTGTTCACATATTCAGAACAGGATCATATGCAAGAAATTAG 942 0.3928 MVPVTMRDFSFYQKALIIQGNGREMWQMDYHHGNPVFFIIINNTKLQKVPEEFLKHLNEDLPNAVLIGPSGDNWQVTILKEGNNLFMQNGWPQFLTDNSVVLDDFLLFTYHGGNCFHVQIFCKSGLERLCLKETRQEQVVIPSLVRTKKSAQRVPFASSFLHRSRSRQKDLSLRNKFSLTKGFSKLKSSIKIENSEACNLADTFTSRNPHWKHLMTKCNVEDHCTLPIATEFARKHIPEAVKQIILWNSEGKFWEVVVTWFGCQNKRYTRFTTGWGRFVRDNRLMRGDTCIFELEDENHLSVHIFRTGSYARN 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02455 313 Gene3D - 27 125 IPR015300 -
Spst2g02455 313 PANTHER B3 DOMAIN-CONTAINING 34 304 - -
Spst2g02455 313 SUPERFAMILY DNA-binding pseudobarrel domain 206 307 IPR015300 -
Spst2g02455 313 SMART B3_2 211 308 IPR003340 GO:0003677
Spst2g02455 313 SMART B3_2 37 124 IPR003340 GO:0003677
Spst2g02455 313 ProSiteProfiles B3 DNA-binding domain profile. 211 308 IPR003340 GO:0003677
Spst2g02455 313 SUPERFAMILY DNA-binding pseudobarrel domain 31 125 IPR015300 -
Spst2g02455 313 CDD B3_DNA 215 306 IPR003340 GO:0003677
Spst2g02455 313 Gene3D - 188 310 IPR015300 -
Spst2g02455 313 Pfam B3 DNA binding domain 48 121 IPR003340 GO:0003677
Spst2g02455 313 Pfam B3 DNA binding domain 214 307 IPR003340 GO:0003677
Spst2g02455 313 CDD B3_DNA 49 122 IPR003340 GO:0003677
Spst2g02455 313 ProSiteProfiles B3 DNA-binding domain profile. 49 124 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02455 35 294 B3 DNA Binding Superfamily AT3G18990 25.309 5.15e-17 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst2g02455 B3 6.7e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02455 - - vum:124823151 548.125