Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02443 ATGGAAGACCATTTTTCCTCTAAGGGAAAGGAAACGGGCTATTGCACTTCTCCTGGGGCTCAATTGGAGGAACCAACATCGGTAGATTGTGGAATGAAAAAATCAGCTTCAGAGGACATGTTTAGCAACTTCTCGGAGCTCATGAACTTTGATACCTATGCTGGTTGGAGCAATAGCTCGTCTATGACTGATCAGAGTTTGGCTAATGTGTTTTCATCATTTTCCTCAGCACCATATGCACCATCTGATGGACTGAATTTAGTGGAACATGTAAATGGTCCATGCTTTATGACAGAAGTTAGTGAAATTCACAATGGAATGGAAAGTTCTCCTAGTTGTGAGGAGAGAGGTATACTTCAGCAAATGGACATTCAACTTGGGTTCTTGGATGAAACAAATGATTTAAATAGCTTTTATTCAAAACAAAATCTTAATGGCACATATCAGCAACTTAATACCTCAGACATGTGCAATTACTTTATCTCAAGGTCATCAGGCAGGTCACTTGATGATAGAATGTTGAGGGCTTTGTCCTTCTTTATGGAATCAGCTGATGGGGGAATGTTGGCACAAGTTTGGGTACCTATAAAACATGGTGATGAATTCATCTTAAGCACAAGTGAGCAACCTTATTTGTTAGATCCAAAACTTGCAGGGTATCGTGAAGTGTCAAGGGCATTCACATTTTCTGCAGAAGGAAAGAAAGGATCATGTTCGGGCCTTCCTACTCGCGTGTTTATTTCACATGTTCCTGAATGGACTTCCAATGTTGGTTACTATAATAAAACTGAGTACTTAAGGTTGGACCATGCAATGAATCATGAAATTCGTGGATCTATTGCTCTTCCTATATCTGATATGCATTCTCAAGAGCCATGTGCTGTATTGGAACTGGTCACTACAAAAGAAAAGCCTAATTTTGACAGAGAATTAGAAATTGTCACTCATGCACTCCAGCTTGTAAATTTAAAGACTACTATGCCTCCACGACTTCTTCCCCAGTGTCTATCAAGTAACAAAAGAGATGCTTTAACAGAGATAATTGATGTGTTACGTGCCGTGTGTCATGCACATAGATTGCCACTAGCACTGACATGGATTCCCTGTTGCTACAGTGAGGGAATAGGAGATGAAGCTGAGAGAATACGAATCAAAGAGGGTCATGCAAGTTCTAATGAAAAATGTGTGCTATGTATTGAGGAATCAGCTTGCTATATAAATGATGGAGCGCTAGGAGGATTTGTTCATGCATGCGTCGAACATCATCTTGAGGAAGGGCAAGGTATAGCTGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTATACTGATGTGAAGACATATGATATTAGTGAATACCCCCTTGTTCATCATGCACGCAAATATAACTTGAATGCTGCAGTTGCAATTCGGCTAAGGAGTACCTATACCAATGATGATGATTACATATTAGAATTCTTTCTGCCTGTGAACATGACAGGGAGTTCAGAACAACAACTTTTATTGGACAATCTCTCAGGTACCATGCGGAGAATTTGTAGGAGTTTGAGAACAGTTTCAGACGCTGAGTTAACAGGAATAGAATCATCTCTTGCTGGGTTTCCTAAGGAAAAAGTCACATGTTTTTTTCCTATGTCCAGGAGAAACTCTCAGATAGCATTCATAAATGAGGATCATGATTCGGTCCAGAAGATGTCCTTGAAAGCATCTAACAATGGAATTGAAGCTGCTCATAGCCAGGTAACGAATGGATCAAGAAAACAGGTTGAGAAAAAGAGAAGTACAGTGGAGAAGAATGTTAGTTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAAGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGGCAACATGGAATTTCAAGATGGCCATCCAGGAAAATCAATAAAGTGAATCGTTCATTAAAGAAGATACAGACTGTGCTTGATTCTGTCCAGGGAGTGGAAGGAGGGTTGAAGTTTGATCCTTATACTGGAGGGTTTATAGCCGGAGGATCAATAATGCAGGACATTGAAACACATAAATATATTCTGTTTCCTGAGAAAAGTGCTGTGAAAGATCCTAAACATGCAACACAAAAGGCAGTCTCAGCACCAGGAAGCACTAGGGAGAATTCAACAATTAAGTTGGATGGTGATAATGGTGTTTGTTTGGTGGGAAACAAACTTGTGCACTCAAGAAATGTGCTTATATCTAACGCCAGTGAGGGAGAATTGAAAAAAGACAATGCTTCTTCTGATGACTTTTGTGAAGATTCAAAATCAATGGCCATGAACGATGGATCAAGCCAGAAAGCCAGCAATTGGGCCAAGACTCAGGATTGTCCTGAACAAACTTGTTCAATATCCTTGGTTACTGATGAGGTTGAAGTTGGAGTAGATGGGGGAGAAGGAATTGATGAACATAACCACCCTAATTCTTCAAGCACTACAAACTCATCCAATGGCTCTGGCTCTATGATGCATGGCAGCTCATCATGCTCTCAAAGCTTGGAGAACCAAAAGCATTCAAAAGTAAAATCAACTTGTGTAGATAGTGGGTCAAAAATGATTGTGAAAGCTAGCTATAGGGGAGACACTATTCGTTTCAAGTTTGACCCATCCGCAGGTTGTTTCCAGCTATATGAAGAAGTTGCAACAAGGTTCAAACTACAAAATGGGTCATTCCAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAGTGACTCAGATCTGCAAGAGTGTATAGAAATTTTGAATGACATTGGCACACGTTGTGTGAAGTTTCTGGTTCGTGATGTGCCTTGTGTTTTAAGCACTCATGGCAGCAACAATTGCTTCTTGTCAGACAGTTCATAG 2898 0.4017 MEDHFSSKGKETGYCTSPGAQLEEPTSVDCGMKKSASEDMFSNFSELMNFDTYAGWSNSSSMTDQSLANVFSSFSSAPYAPSDGLNLVEHVNGPCFMTEVSEIHNGMESSPSCEERGILQQMDIQLGFLDETNDLNSFYSKQNLNGTYQQLNTSDMCNYFISRSSGRSLDDRMLRALSFFMESADGGMLAQVWVPIKHGDEFILSTSEQPYLLDPKLAGYREVSRAFTFSAEGKKGSCSGLPTRVFISHVPEWTSNVGYYNKTEYLRLDHAMNHEIRGSIALPISDMHSQEPCAVLELVTTKEKPNFDRELEIVTHALQLVNLKTTMPPRLLPQCLSSNKRDALTEIIDVLRAVCHAHRLPLALTWIPCCYSEGIGDEAERIRIKEGHASSNEKCVLCIEESACYINDGALGGFVHACVEHHLEEGQGIAGKALQSNHPFFYTDVKTYDISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMTGSSEQQLLLDNLSGTMRRICRSLRTVSDAELTGIESSLAGFPKEKVTCFFPMSRRNSQIAFINEDHDSVQKMSLKASNNGIEAAHSQVTNGSRKQVEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGGFIAGGSIMQDIETHKYILFPEKSAVKDPKHATQKAVSAPGSTRENSTIKLDGDNGVCLVGNKLVHSRNVLISNASEGELKKDNASSDDFCEDSKSMAMNDGSSQKASNWAKTQDCPEQTCSISLVTDEVEVGVDGGEGIDEHNHPNSSSTTNSSNGSGSMMHGSSSCSQSLENQKHSKVKSTCVDSGSKMIVKASYRGDTIRFKFDPSAGCFQLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVSDSDLQECIEILNDIGTRCVKFLVRDVPCVLSTHGSNNCFLSDSS 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02443 965 Gene3D - 862 944 - -
Spst2g02443 965 SMART PB1_new 865 947 IPR000270 GO:0005515
Spst2g02443 965 MobiDBLite consensus disorder prediction 810 849 - -
Spst2g02443 965 Pfam PB1 domain 868 946 IPR000270 GO:0005515
Spst2g02443 965 MobiDBLite consensus disorder prediction 1 27 - -
Spst2g02443 965 MobiDBLite consensus disorder prediction 818 849 - -
Spst2g02443 965 ProSiteProfiles RWP-RK domain profile. 579 667 IPR003035 -
Spst2g02443 965 ProSiteProfiles PB1 domain profile. 865 947 IPR000270 GO:0005515
Spst2g02443 965 MobiDBLite consensus disorder prediction 756 786 - -
Spst2g02443 965 PANTHER PROTEIN NLP8 133 958 IPR045012 GO:0003700
Spst2g02443 965 Pfam RWP-RK domain 599 647 IPR003035 -
Spst2g02443 965 SUPERFAMILY CAD & PB1 domains 860 948 - -
Spst2g02443 965 CDD PB1_NLP 866 946 IPR034891 -
Spst2g02443 965 MobiDBLite consensus disorder prediction 766 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02443 Spst-Chr2 24085888 24090124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02443 1 961 NLP Transcription Factor Family AT2G43500 49.538 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Spst2g02443 PB1 1.6e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02443 - - gmx:100793770 1637.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00318 5 2684801 2690963 Spst2g02443 2 24085888 24090124 PCT