Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02434 ATGCCACTTCCGGCGAAACCAATGAGGGATTCCGACGAGTCGGCGATCCCTTCCAACAACCTGTGGGTAGGGAACCTGGCGCCGGACGTCACCGACGCCGATCTGATGGAACTTTTCGCCAAATACGGCGCACTCGACAGCGTAACCTCTTATTCCGCTCGCAGTTACGCCTTCGTCTTCTTCAAGCGCGTTGAAGACGCAAAAGCCGCCAAAAACGCTCTCCAAGGAACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAGTTTGCCAGACCGGTCACCCTTTGTTCAACTGGGAAATTCAAAGCAAAGGCATGCAAACAGCTTTGGGTGGGTGGTATTAGCCCATCTGTTACAAAGGAAGAACTGGAAGCTGAATTTCGTAAAATTGGTAAAATTGAGGATTTTAAGTTCTTCAGAGACAGAAATACTGCCTGTGTTGAATTTTTCAATCTGGAAGATGCTTCTCAGGCCATGAAAATAATGAACGGGAAAAGAATAGGTGGGGAGCATATTCGTGTTGACTTCCTTCGATCACAAGCTACAAAAAGGGATCAGTTGCTGGATTATGGTCAGTTTCAAGGAAAAAGCTTGGGGCCTAGTGATGCTTATTCTGGACAGAAAAGACCACTGCATTCACAACCTCCAATGGGAAGGAAAGGGGATGGTCAACCAAGCAATGTTTTGTGGATTGGTTATCCTCCTGCTGTTCAGATTGATGAACAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTTGAGGCATTATTCTACAGTTGAGTTTAGAAGTGTGGATGAAGCTCGACGTGCAAAAGAGGGCCTTCAAGGGCGCCTTTTTAATGATCCTCGAATAACAATAATGTATTCCAGCAATGACCCAGTCCATGGCAGTGATTACCCTGGCTTTTTTCCTGGAAGTAATGGACCAAGGCCTGATATATTGCTGAATGAGCATCCATTTCGACCATTACAAATGGATGCATTTGGTCATAATCGTCCAATGGTTCCAAATAATTTTACTGGTCAGTTACCACCTAGTGGTATTATGGGTCCAAATGTACCAATGCGACCTTTTGGTCCTCACAGTGGTGTTGAATCTGTTATTTCTGGCCCGGAGTTTAATGAGATTAATGCGCTCCACAAATTTCAGGATGGTAGCTCCAAGAGTAACATGGGTCCAAACTGGAAAAGACCATCTCCTCCTGCACCAGGGATGCTTTCTTCTCCTGCACCGGGTGCTAGGCATCCTACAAGATCAACTTCGGGTGCATGGGATGTACTTGACATAAACCATATTCCAAGAGATTCTAAACGTTCAAGGATAGATGGACCCTTGCCTGTTGACGAAGCCCCCTTTCCTTTGAGGAATATAGATGGACCCTTACCTGTTGACGAAGTAGGTGGTTCTGGTCCATATGCAAACATTCAAGGAAAGAGTCACCTTGGTCCAATGAGCTCAAGGATTACAGCTGGAGTTCAGGGTATGGTCCAACCTGATAACGATCATACTTGGCGTGGAATTATTGCAAAAGGCGGAACTCCCGTTTGTCGTGCTAGATGTGTACCAATTGGGAAAGGGATTGGAACTGAGCTTCCAGATGTTATTGATTGCTCAGCTAGAACGGGATTGGATATACTAACTAAACACTATGCCGATGCAATTGGTTTTGATATTGTATTCTTTCTGCCTGACAGTGAAGATGATTTTGCATCATATACTGAATTCCTTCGCTATCTCAGTGCAAAAAATCGTGCTGGTGTTGCCAAATTTGTGGATAACACCACATTATTCTTGGTGCCTCCTTCAGATTTTCTCACAAGAGTTTTGAAAGTCAGTGGACCTGAGCGACTATATGGTGTGGTTCTGAAGTTTCCACAAGTGCCAAGTAGTGCACCTGTGCAACAGCCATCACACTTGTCTGTACCAACTACTCAGTATATGCAGCAGATTCCTCCGAAGCAGACTGAATATGGTTTGACTCCTATGAAAGAGGAACAGGTTTTGTCAATGGATTATAAGAGACCATTGCATGAGGATTCTAAGCCTCCTTCTAAATCAGTCTACCTACCTACAGGTGGGCCCCCTTCAGTTCATTCTGTGCTTCCAGATTATGCTCCTAATAATATTGTTACTGGGTCCCAACCTGGAGTTGCATTAACACCTGAGCTTATTGCAACTTTAGCTTCTTTTCTCCCTACAACTACACCATCATCTGCCACTGATGGTGCCAAGTCTGGAGTAGGTTCCTTGACCATGAAGCCTCCGTTTCCTCCCGTGGCACCAAATGATGGAAGTCAATCTTATATATGGAAACAGGACAATCAAGTTGCTGATCAATCCACCCATCCTCCTCAGCAGTTGAGGAGTATGTATAACGTTCACAATGCTCACTATCAGCCCTATCCACCAGCATCTGCTTCAGCTGGCAATCCTGCTCAAGTTGTCTCTGGCAGTTCTCATATCCAAGATACATCAGCCAGCATGCATCAGCAAGGTGCTGTTTCATCAAGACACATGCCTAATTTCATGATGCCTTCTCAAAGTGGACAAGTAGCTGCATCCCCTCATGGAAGTCAGCATTATCAAGTTGAAGTTTCCCCTAGCAATCAGAAAAGCTTTGGAGTGGTGCAAGGAACTGATGCCTCTGTTATATACAATTCTCAGGCTTTCCAGCAACCTAATAACAATCCACTCCCATTCCAGCAACCTAATAATTCTATTGCCTCAACTAATCAAGTTACTGGTGCTACTTCTTCACAGCAGCAAACTAGCATGCCATATACAGTCGGCCAAGTAAACTCAGAGACCCCAAATCAGCAACTTTCTGCTTTTGGAGTTGGTCAAGGCACACCAGAGGTGGAGGCTGATAAGAACCAGAGATACCAGTCAACATTACAGTTTGCTGCCAATCTTCTTCTCCAAATACAACAAAAGCAACAGCAAGCGCCAGGAGGACATGGATCGGGAATTCAACAATGA 3003 0.4482 MPLPAKPMRDSDESAIPSNNLWVGNLAPDVTDADLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGTSLRGSSLKIEFARPVTLCSTGKFKAKACKQLWVGGISPSVTKEELEAEFRKIGKIEDFKFFRDRNTACVEFFNLEDASQAMKIMNGKRIGGEHIRVDFLRSQATKRDQLLDYGQFQGKSLGPSDAYSGQKRPLHSQPPMGRKGDGQPSNVLWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPLRHYSTVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSNDPVHGSDYPGFFPGSNGPRPDILLNEHPFRPLQMDAFGHNRPMVPNNFTGQLPPSGIMGPNVPMRPFGPHSGVESVISGPEFNEINALHKFQDGSSKSNMGPNWKRPSPPAPGMLSSPAPGARHPTRSTSGAWDVLDINHIPRDSKRSRIDGPLPVDEAPFPLRNIDGPLPVDEVGGSGPYANIQGKSHLGPMSSRITAGVQGMVQPDNDHTWRGIIAKGGTPVCRARCVPIGKGIGTELPDVIDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVSGPERLYGVVLKFPQVPSSAPVQQPSHLSVPTTQYMQQIPPKQTEYGLTPMKEEQVLSMDYKRPLHEDSKPPSKSVYLPTGGPPSVHSVLPDYAPNNIVTGSQPGVALTPELIATLASFLPTTTPSSATDGAKSGVGSLTMKPPFPPVAPNDGSQSYIWKQDNQVADQSTHPPQQLRSMYNVHNAHYQPYPPASASAGNPAQVVSGSSHIQDTSASMHQQGAVSSRHMPNFMMPSQSGQVAASPHGSQHYQVEVSPSNQKSFGVVQGTDASVIYNSQAFQQPNNNPLPFQQPNNSIASTNQVTGATSSQQQTSMPYTVGQVNSETPNQQLSAFGVGQGTPEVEADKNQRYQSTLQFAANLLLQIQQKQQQAPGGHGSGIQQ 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02434 1000 MobiDBLite consensus disorder prediction 898 917 - -
Spst2g02434 1000 CDD RRM_SF 21 87 - -
Spst2g02434 1000 Pfam SPOC domain 507 623 IPR012921 -
Spst2g02434 1000 SMART rrm1_1 107 174 IPR000504 GO:0003723
Spst2g02434 1000 SMART rrm1_1 227 295 IPR000504 GO:0003723
Spst2g02434 1000 SMART rrm1_1 20 87 IPR000504 GO:0003723
Spst2g02434 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 299 IPR000504 GO:0003723
Spst2g02434 1000 FunFam Flowering time control protein FPA 11 93 - -
Spst2g02434 1000 FunFam flowering time control protein FPA 219 312 - -
Spst2g02434 1000 CDD RRM_SF 108 174 - -
Spst2g02434 1000 MobiDBLite consensus disorder prediction 743 772 - -
Spst2g02434 1000 SUPERFAMILY RNA-binding domain, RBD 205 307 IPR035979 GO:0003676
Spst2g02434 1000 SUPERFAMILY RNA-binding domain, RBD 6 92 IPR035979 GO:0003676
Spst2g02434 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 178 IPR000504 GO:0003723
Spst2g02434 1000 MobiDBLite consensus disorder prediction 197 224 - -
Spst2g02434 1000 SUPERFAMILY RNA-binding domain, RBD 105 200 IPR035979 GO:0003676
Spst2g02434 1000 Gene3D - 220 308 IPR012677 -
Spst2g02434 1000 MobiDBLite consensus disorder prediction 392 429 - -
Spst2g02434 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Spst2g02434 1000 CDD SPOC_FPA-like 512 631 - -
Spst2g02434 1000 Gene3D - 5 93 IPR012677 -
Spst2g02434 1000 Gene3D - 96 185 IPR012677 -
Spst2g02434 1000 PANTHER RNA RECOGNITION MOTIF-CONTAINING 17 89 - -
Spst2g02434 1000 FunFam Flowering time control protein FPA isoform A 104 218 - -
Spst2g02434 1000 MobiDBLite consensus disorder prediction 949 969 - -
Spst2g02434 1000 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 292 IPR000504 GO:0003723
Spst2g02434 1000 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Spst2g02434 1000 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 171 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02434 Spst-Chr2 23977918 23984789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02434 20 289 Eukaryotic Initiation Factors Gene Family AT2G23350 22.997 1.75e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02434 - - gmx:100777570 1748.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00333 5 2772589 2777086 Spst2g02434 2 23977918 23984789 PCT