Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02413 ATGTATCCAAAACGGTCAGGCCAAGATGGCCCTGATTTGAGACAGGTGCGCACAAGTGATAGGATAAAGACAAGACCAAATATTTATGGCCGACCATACTTGTTTTACAATCAAAATCTTAGGCGCACCAGGAAAAACAAGAATAAGACAAGGACTGCAGCTTCACAAATTGCGAAAATGTTGCGTCCAGGGAATCGGAAATCACAAGATTCTAATACTAATTCTGGCTCTGCCAACCTTCGACGTTCAACAAGGAAGAGAAGGCTTAACGTAAATCTTGAAGATTTTACAGACAGCTCTGGAGCTGAAGACGAAGACCTAATGAGACCTGGATATCCCTCAATGAGAAACCGGATAAAAAATAGAGTCAAACAGGATGGTTTGATGTCTACTAAGCGCAAAAGAGAAGCAGAGACTAAGCCAACACCTCGACGTGAAGGTTTACGTCCTCGTCGTTCAAAGGGTGCTGTGATAGAACGATTGATTTCAGAATCAGATGATGATGAGCAAGACCTTTCAGAGGAAAAGGTTGATCAAGATGAAACAGAAAATGGAAATGATGTTGAGGAAAATGATGCAGATGATGTCCAAAATGAGATTGAGGGAGACGCCGAGGGTGAAGATGAAGGTGAGGATGAAGGTGATGAAGATGGTGATGATGAAGAGGGTGAAGAAGAGCAGGATGGAAGAAGGCGCTACGATCTTCGAAATCGTTCAGATGTTCGGAGGTTCTCTATGGAGGAAAGAAAGGCCCGACCTAGATCTCCTAGAAGAGTGTTACATCAAGGTATGGGAACTAAGGTCAGCAGGGATGTAAGGAAAGGTGGTTCACGAGTTCATAAGCGTCATCGTTTAGCAAGGCCTGAAGATTCTGATGACTCACTTCTCGTGGATGAGCTGGATCAAGGCCCAGCTATTCCATGGGGACGAGGTGGCAACAGATCTGGTCCACCTTGGCTTTTTGGAGGCTTAGACATGCATGGAACAACTGCTTTCGGATTAAATCTTGCTGCATCAGGTTGGGGTCATCAGGGTGATGCTTTGGCTACTCTAACATCAGGGATTCAAACTGCTGGACCAAGCTCTAAGGGTGGGGCAGATATTCAACCCTTACAGGTTGATGATAGTGTTAGTTTTGATGATATAGGTGGGCTCTCTGAATACGTTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTGTTATATCCAGATTTTTTCGCAAGTTATCACATAACTCCACCCAGGGGGGTGTTATTATGTGGGCCCCCTGGCACAGGGAAAACATTAATTGCGAGAGCTTTGGCTTGTGCTGCTTCAAAAGCAGGCCAAAAGGTTAGCTTTTACATGCGCAAAGGAGCAGATGTTCTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAGGAAGCACAAAGGAATCAACCTTCTATAATCTTCTTTGATGAAATAGATGGACTTGCACCAGTGAGGTCTAGCAAGCAAGAACAAATTCACAATTCAATTGTGTCCACATTGCTTGCTTTGATGGATGGTCTTGATTCTCGTGGCCAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCCATTGATGGAGCCTTACGACGCCCTGGTAGATTTGATCGTGAGTTTAACTTCTCCTTACCTGGTTGTGAGGCACGTGCTGAGATATTAGACATTCATACTCGTAAGTGGAAGCATCCTCCTCCAAATGAGCTGAAAAAGGAACTTGCAGCTAGTTGTGTAGGTTACTGTGGTGCTGACTTGAAAGCTCTTTGTACTGAAGCTGCCATCCATGCATTTCGTCAAAAGTATCCACAGGTTTATACAAGTGATGACAAATTTGTCATAGATGTTGATTCTGTCAAGGTAGAAAAGACTCATTTCATTGAAGCTATGTCTACCATTACTCCTGCTGCTCATAGGGGAGCCATTGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCATGTCTCCAGCGACATCTAGAAAAAGCTATGAGTGTTATATCTGATATTTTCCCTCCAGCTTCTATTACATCTGAGTTGACTAAACTTTCAATGCTTTCCTACGGGTCAGCAATTCCACTTGTGTATCGACCTAGGCTTCTACTTTGTGGTGGTGAAGGTACAGGGCTGGATCATCTTGGCCCTGCGGTTTTACATGAGCTGGAAAAGTTTCCTGTACATTCGCTAGGACTTCCATCTCTTCTGTCCGATCCCAGTGCAAAGACACCAGAAGAGGCATTGGTACATATATTTGGTGAAGCTAGAAGAACAACACCATCAATTCTCTATTTACCACAGTTTGATGTTTGGTGGGAGACTGCTCATGAACAGCTCAGGGCTGTTCTCCTGACGTTGCTAGAGGAGTTACCATCAGATCTGCCTATCTTACTGCTTGGTACATCCTCAGTTGCGCTTGCTGACGTTGAGGAAGTCCCTACTTCAGTTTTCCCTCACCGCACAGTTTATCAAGTGAATATGCCATGTGCCAAAGATAGGACTTTGTTTTTCAATCTTTTGATAGAAGCTGCTATGTCAATATTGTTGGAGGGAATCAACAAGAAATCACAAGATACAGGAGACCTCCCTGAACTTCCTAAGGCACCAAAATTGGCTAGTGGTCCAAAAGTATCTGAGCTAAAAGCAAAGGTGGAAGCTGAGCAGCATGCACTTCGTAGATTACGAATGTGCCTTAGAGATATTTGCAACCGGATACTGTATGACAAAAGATTTAATGCCTTCCATTATCCAGTGTCAGACGATGATGCACCAAATTATCGGTCAATTATACAGAACCCAATAGACATGGCTTCCATCTTGCAGCATGTTGATAATGGCCAATATATTACGTGTGCTGCATTCATGCAGGATATCAATCTTATTGTTTCCAATGCAAAGGCCTACAATGGAGATGATTACAGTGGTGCTAGGATTGTCAGTAGAGCTTGTGAGCTCCGTGATGCGGTGCATGGGATGCTCTCACAGATGGATCCAGCACTGGTTGCATATTGTGACAAGATTGCTAGCCAAGGTGGCCCAGTTCAGTTGTCTGATGAATTAGGGGATTCTACATTCCCTGCTACTCCTGTTGTGCAGCTGGGTGCTGGTACTAGAATGAGTGCTCGACTCCGTCATGTCCAACCAGAGGTTAACGTAGATCAGAGTTATGAAGCGTTGAAGCGAGCTAAGAAGATCACCGAAGTGCATCCAGAAGACAAGTCCCAAGATTCTGCACTGCCAAAGTCTTCCCAGGAGCATCAAGCTAATGATACAAATTCTGAAAGCCTCGAACCTATACCAATAGAAGGAAACTTGCATGGAACTTGTACAAACAACCTTGCAGATGGCAACAGTCCCGAGGATGTCACAATGCTAGATGGTGAATTTTCGAGAGAAGTGGAGTCTGTCAAGGAACTTCTTGTGAAGCGTAGTGAAAATTTCAGCATCCCACAACTCGAAAGACTTTACACGAGAATTATGAAGGGCGTGTTTGAAACCAAAAGTAAGGGAGTGAATGGGGATCTTAACTCTTCGGTTTTGAAGTTTTTGTTGAATTTTGTAGAGGATGATGCAAATTTCTAA 3600 0.4378 MYPKRSGQDGPDLRQVRTSDRIKTRPNIYGRPYLFYNQNLRRTRKNKNKTRTAASQIAKMLRPGNRKSQDSNTNSGSANLRRSTRKRRLNVNLEDFTDSSGAEDEDLMRPGYPSMRNRIKNRVKQDGLMSTKRKREAETKPTPRREGLRPRRSKGAVIERLISESDDDEQDLSEEKVDQDETENGNDVEENDADDVQNEIEGDAEGEDEGEDEGDEDGDDEEGEEEQDGRRRYDLRNRSDVRRFSMEERKARPRSPRRVLHQGMGTKVSRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGPAIPWGRGGNRSGPPWLFGGLDMHGTTAFGLNLAASGWGHQGDALATLTSGIQTAGPSSKGGADIQPLQVDDSVSFDDIGGLSEYVDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFSLPGCEARAEILDIHTRKWKHPPPNELKKELAASCVGYCGADLKALCTEAAIHAFRQKYPQVYTSDDKFVIDVDSVKVEKTHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSVISDIFPPASITSELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTLLEELPSDLPILLLGTSSVALADVEEVPTSVFPHRTVYQVNMPCAKDRTLFFNLLIEAAMSILLEGINKKSQDTGDLPELPKAPKLASGPKVSELKAKVEAEQHALRRLRMCLRDICNRILYDKRFNAFHYPVSDDDAPNYRSIIQNPIDMASILQHVDNGQYITCAAFMQDINLIVSNAKAYNGDDYSGARIVSRACELRDAVHGMLSQMDPALVAYCDKIASQGGPVQLSDELGDSTFPATPVVQLGAGTRMSARLRHVQPEVNVDQSYEALKRAKKITEVHPEDKSQDSALPKSSQEHQANDTNSESLEPIPIEGNLHGTCTNNLADGNSPEDVTMLDGEFSREVESVKELLVKRSENFSIPQLERLYTRIMKGVFETKSKGVNGDLNSSVLKFLLNFVEDDANF 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02413 1199 SMART bromo_6 897 1004 IPR001487 GO:0005515
Spst2g02413 1199 FunFam ATPase family AAA domain-containing protein 889 1017 - -
Spst2g02413 1199 MobiDBLite consensus disorder prediction 40 237 - -
Spst2g02413 1199 MobiDBLite consensus disorder prediction 267 292 - -
Spst2g02413 1199 FunFam ATPase family AAA domain-containing protein 2B 553 638 - -
Spst2g02413 1199 ProSitePatterns AAA-protein family signature. 522 540 IPR003960 GO:0005524|GO:0016887
Spst2g02413 1199 Pfam Bromodomain 907 978 IPR001487 GO:0005515
Spst2g02413 1199 MobiDBLite consensus disorder prediction 1 23 - -
Spst2g02413 1199 MobiDBLite consensus disorder prediction 1072 1124 - -
Spst2g02413 1199 ProSiteProfiles Bromodomain profile. 920 982 IPR001487 GO:0005515
Spst2g02413 1199 Pfam ATPase family associated with various cellular activities (AAA) 417 551 IPR003959 GO:0005524|GO:0016887
Spst2g02413 1199 FunFam ATPase family, AAA domain-containing 2 375 558 - -
Spst2g02413 1199 MobiDBLite consensus disorder prediction 119 163 - -
Spst2g02413 1199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 642 IPR027417 -
Spst2g02413 1199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 701 913 IPR027417 -
Spst2g02413 1199 SMART AAA_5 413 554 IPR003593 GO:0016887
Spst2g02413 1199 MobiDBLite consensus disorder prediction 1086 1104 - -
Spst2g02413 1199 Gene3D - 691 818 IPR027417 -
Spst2g02413 1199 MobiDBLite consensus disorder prediction 164 224 - -
Spst2g02413 1199 SUPERFAMILY Bromodomain 895 1009 IPR036427 GO:0005515
Spst2g02413 1199 Pfam AAA+ lid domain 579 616 IPR041569 -
Spst2g02413 1199 MobiDBLite consensus disorder prediction 65 80 - -
Spst2g02413 1199 PRINTS Bromodomain signature 929 945 IPR001487 GO:0005515
Spst2g02413 1199 PRINTS Bromodomain signature 945 963 IPR001487 GO:0005515
Spst2g02413 1199 PRINTS Bromodomain signature 963 982 IPR001487 GO:0005515
Spst2g02413 1199 CDD Bromo_AAA 897 1007 - -
Spst2g02413 1199 Gene3D - 375 645 IPR027417 -
Spst2g02413 1199 Gene3D - 553 638 - -
Spst2g02413 1199 Gene3D - 889 1017 IPR036427 GO:0005515
Spst2g02413 1199 PANTHER AAA DOMAIN-CONTAINING 1075 1177 IPR045199 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02413 Spst-Chr2 23788406 23795524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02413 363 617 Calmodulin-binding Proteins AT3G56690 36.680 5.06e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02413 K22531 - gmx:100787765 2141.31