Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02407 ATGGAGTCGGAGGATGATATGCACGACGCCAACGATGTCGAGTCCCTCGACGATGATTTCTACAGCGGCGGGACCGATGATGCACCCTTGGACTACTACAGCGACTACGACGACGACGCCGATGATTACTTCGAAGACGCCGACAGGATTGAGTCTCGTCGCCCTGAGCAAAACTTTACCATTTTGAAGGAATCCGATATCCAACAGAGACAGGAAGAGGACATCACTAGAGTAGCAACTGTTCTTTCCATATCAAGAGTTTTAGCAAGCATACTACTTCGTCACTACAATTGGAGCGTCAGCAGAGTGCATGATGCATGGTTTGCTGATGAAGATCGAGTCAGAAATGCAGTTGGTTTGTTGGAGAAACCAATTGTCCAGCATGATAATACTGGAGAGCTTACATGCGGTATCTGTTTTGAAAATTATCCTCGGGCAAGAATTGAAATGGCTTCCTGTGGTCATCCCTATTGTATCACATGCTGGGAAGGCTATATCAGCACATCCATTAATGATGGTCCCGGATGTTTGATGCTGAGATGTCCTGATCCCTCTTGTGGTGCTGCTGTTGGTCAAGATATGATTAATCTTTTAACATCCGATGAAGATAGGCAGAAATATACACGTTACCTTCTTAGATCATACATTGAAGATAATAAGAAGTCCAAATGGTGTCCTGCTCCAGGTTGTGAATATGCAGTCACGTTTGATGCTGGTAGTGGTGGCAATTATGATGTCTCTTGCCTCTGTTCATATAGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTGGCAAAGTGGATTATGAAGAACAGTGCGGAGTCTGAAAACATGAATTGGATACTTGCGAATTCAAAGCCATGCCCCAAGTGCAAGCGACCAATTGAGAAAAATCAAGGGTGCATGCACATGACTTGCACACCTCCCTGTAAATATGAATTTTGCTGGCTCTGCCTTGGTGTATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAACAGCTAAACAAGAAGGAGTGTATGATGATACAGAAAGAAGAAGGGAAATGGCGAAGAACTCACTAGAGAGATATACACATTATTATGAGCGATGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTGCAGCAGATGCAAAATGTTCATATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTACAAATAGTCGAGTGTAGAAGAGTACTGAAATGGACATACGCATACGGGTTCTATTTACAGGAGCATGAGCATGCGAAAAAGCAGTTCTTCGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGACTTCATCAATGTGCAGAAAAAGAACTACAGCCATTCCTATGCGCTGATGACCCATCTAGAGAATTCAACGACTTTCGTACAAAACTAGCTGGATTGACAAGTGTGACTAGAAACTACTTTGAGAATTTAGTAAGGGCATTAGAGAATGGTTTATGTGATGTGGATAGTAATGGAGCTTCCCTGAGCAGAGCAACGAGCTCAAAAAGTGCCGCTGGGAGTAGTAAGGGGAGATCCGGAAGAGTAAAGGGAACTTTTCGAACCAGCATGTCCAGCAGAATGAATGATGATAGTCATTGGTGTTGCGAGCATTGTACCTATGCAAATGTCAAATCTGCCACCACATGCCAGATGTGCTATCAACGGCGATGA 1764 0.4422 MESEDDMHDANDVESLDDDFYSGGTDDAPLDYYSDYDDDADDYFEDADRIESRRPEQNFTILKESDIQQRQEEDITRVATVLSISRVLASILLRHYNWSVSRVHDAWFADEDRVRNAVGLLEKPIVQHDNTGELTCGICFENYPRARIEMASCGHPYCITCWEGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLTSDEDRQKYTRYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSGGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWIMKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKYEFCWLCLGVWSDHGERTGGFYACNRYETAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQNVHIEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLQEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLCADDPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLCDVDSNGASLSRATSSKSAAGSSKGRSGRVKGTFRTSMSSRMNDDSHWCCEHCTYANVKSATTCQMCYQRR 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02407 587 CDD Rcat_RBR_ARI7-like 291 345 - -
Spst2g02407 587 FunFam RBR-type E3 ubiquitin transferase 130 219 - -
Spst2g02407 587 MobiDBLite consensus disorder prediction 526 556 - -
Spst2g02407 587 CDD BRcat_RBR_ANKIB1 212 277 - -
Spst2g02407 587 ProSiteProfiles TRIAD supradomain profile. 132 346 IPR044066 -
Spst2g02407 587 Gene3D - 264 519 - -
Spst2g02407 587 ProSitePatterns Zinc finger RanBP2-type signature. 564 583 IPR001876 -
Spst2g02407 587 CDD RING-HC_ARI6-like 133 194 - -
Spst2g02407 587 ProSiteProfiles Zinc finger RING-type profile. 136 180 IPR001841 -
Spst2g02407 587 SUPERFAMILY RING/U-box 131 217 - -
Spst2g02407 587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 216 IPR013083 -
Spst2g02407 587 MobiDBLite consensus disorder prediction 1 33 - -
Spst2g02407 587 Pfam Ariadne domain 355 516 IPR045840 -
Spst2g02407 587 Pfam IBR domain, a half RING-finger domain 205 268 IPR002867 GO:0008270
Spst2g02407 587 Pfam IBR domain, a half RING-finger domain 285 332 IPR002867 GO:0008270
Spst2g02407 587 FunFam RBR-type E3 ubiquitin transferase 269 519 - -
Spst2g02407 587 SMART ibrneu5 281 342 IPR002867 GO:0008270
Spst2g02407 587 SMART ibrneu5 205 268 IPR002867 GO:0008270
Spst2g02407 587 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 66 434 IPR031127 GO:0004842|GO:0016567
Spst2g02407 587 SUPERFAMILY RING/U-box 287 335 - -
Spst2g02407 587 SUPERFAMILY RING/U-box 206 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02407 Spst-Chr2 23734269 23748514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02407 17 587 ARIADNE family AT1G65430 69.931 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02407 K11968 - gmx:100784195 1102.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00354 5 2934750 2940560 Spst2g02407 2 23734269 23748514 PCT