Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02381 ATGGAGTCAGATCTTCAGCAGCACCCTCCCATGTTTTTGGATCACCACCAGCAGCAGACGAATTCAGGGTTGACACGGTACCGATCGGCTCCGAGTTCGTATTTTTCGAACATCATCGACCGTGAGTTCTACGAGCACGTTTTCAATCGACCCTCTAGCCCAGAAACAGAACGAATGTTGACACGCTTTGTGAATAGTCTTGGTGGGGGTGATGCTGATGCTGCTGATGCAGAGGATTCACTTCCTACACAGAATCCCTCAACCGTTGTTGCAGTTAAAGAAGAGGTTAATCAACAACCTAAGGACATGCCTTTACCGTCCATCAATAATGAACCCCTTGTTCTCCAACAACAACAACAACAGCAACAACCACAACAACAGCATCAACAGCAAAGTAATATCAATAATTATGGCTCTTCTGCTCCTCAGAATTTTTACCACAACATTGGACGACCACCTTTGCCAAACCAGATGGAGACTGGTCGTAGAAGTACTTCAAATCTTATCAGGCATGGTAGCTCACCTGCTGGATTGTTTTCGAACATTAACATTGAAAGTGGTTATGCTGCTGTAAGATGCATGGGGACTATGGGAGCTGTTAATAATAGTACTGAGGAAGCAAACTTTTCTCCCGCAACAAGGATGAAGAATGCACCAAACTACTCTTCTGGACTAATGTCATCAAGGACTGAAATTGGAAACAAAAGCAATACACAGAATGATGCAGAAAATGAAGGGTTTGCTGAAAACCAGGGCAATGAATTTATCCCTGGTTTCCCTGTTGGTCCATGGGATGATTCTGCAATCATGCCTGACAATATAACAGGTCTGAAGAGATATAGAGATGAAGATGTAAAACCATTTTCTGGTTTAAACGCACCTGAAAATCAGAATGAAACAGGAGGCCAACCTTCTACTGCTTTGTCTCATCAATTGAGTATGCCAAATACTTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTACAGCTCTCAGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGAGGATGTGCCACTCACCCAAGGAGCATTGCGGAAAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAACTGCAAGATCTCGTCCCCAACATGGATAAGCAAACAAACACTGCAGACATGTTGGACTTAGCCATTGAGTACATTAAAGACCTTCAAAAGCAAGTTGAGACTCTTTCAGATAATCGCGCTAAGTGTACGTGTTCACACAAGCAGCAGCAGCAGCAATAA 1257 0.4344 MESDLQQHPPMFLDHHQQQTNSGLTRYRSAPSSYFSNIIDREFYEHVFNRPSSPETERMLTRFVNSLGGGDADAADAEDSLPTQNPSTVVAVKEEVNQQPKDMPLPSINNEPLVLQQQQQQQQPQQQHQQQSNINNYGSSAPQNFYHNIGRPPLPNQMETGRRSTSNLIRHGSSPAGLFSNINIESGYAAVRCMGTMGAVNNSTEEANFSPATRMKNAPNYSSGLMSSRTEIGNKSNTQNDAENEGFAENQGNEFIPGFPVGPWDDSAIMPDNITGLKRYRDEDVKPFSGLNAPENQNETGGQPSTALSHQLSMPNTSAEMAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAIEYIKDLQKQVETLSDNRAKCTCSHKQQQQQ 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02381 418 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 30 415 - -
Spst2g02381 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 347 407 IPR036638 GO:0046983
Spst2g02381 418 MobiDBLite consensus disorder prediction 224 247 - -
Spst2g02381 418 MobiDBLite consensus disorder prediction 286 310 - -
Spst2g02381 418 Gene3D - 345 418 IPR036638 GO:0046983
Spst2g02381 418 Pfam Helix-loop-helix DNA-binding domain 349 395 IPR011598 GO:0046983
Spst2g02381 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 344 394 IPR011598 GO:0046983
Spst2g02381 418 SMART finulus 350 400 IPR011598 GO:0046983
Spst2g02381 418 MobiDBLite consensus disorder prediction 114 166 - -
Spst2g02381 418 MobiDBLite consensus disorder prediction 114 146 - -
Spst2g02381 418 FunFam Transcription factor bHLH130 family 345 414 - -
Spst2g02381 418 MobiDBLite consensus disorder prediction 224 251 - -
Spst2g02381 418 Coils Coil 384 404 - -
Spst2g02381 418 MobiDBLite consensus disorder prediction 291 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02381 Spst-Chr2 23454934 23457768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02381 1 411 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.515 1.21e-78 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst2g02381 HLH 5.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02381 - - gmx:100803833 669.077