Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02366 ATGCAGGAGAGTTCGTATCCTTCAAGTTCAAGCTTTTATAAGTTTGGATTATCTGAACCTGAGAATTCATCGTACTATCGTTACGGCCATGGTTATGAGATAAGTCATCACGAACCACTGGTGGATGAGTATAGGAGACCTTCAGAGAACTCATTGACACTCAATGAACAGCCAGCAGCAGTAAGCACAGAATGGGTTGAAAGTGGAAACACTGATGCACGGGACAATTCTATCGAATGTCCTCGAAGACATCATAGTAATTCAAGTGATTATCAGGTCATTTGGCAAGATAATATTGATCCCGACAACATGACCTATGAGGAACTACTTGAATTAGGTGAAGCTGTTGGAACCCAAAGCCGCGGTCTCACCCAAGAACAGATCTCCTCACTCCCAGTGTCGAAGTACAAATGTGGTTTCTTCTTGAGGAAGAAGTCACGAGATGAGAGATGTGTGATTTGCCAGATGGAATATAAAAGAGGGGACAAGCGTATCACCTTGCCATGTAAACATCTTTATCATGCTAGTTGTGGGAACAGGTGGCTTAGCATCAATAAGGCTTGCCCTATATGTTACACAGAAGTGTTTGCCGACAAGTCAAAACACAAATAA 612 0.4248 MQESSYPSSSSFYKFGLSEPENSSYYRYGHGYEISHHEPLVDEYRRPSENSLTLNEQPAAVSTEWVESGNTDARDNSIECPRRHHSNSSDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISSLPVSKYKCGFFLRKKSRDERCVICQMEYKRGDKRITLPCKHLYHASCGNRWLSINKACPICYTEVFADKSKHK 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02366 203 SMART ring_2 151 191 IPR001841 -
Spst2g02366 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 197 IPR013083 -
Spst2g02366 203 Pfam Ring finger domain 150 191 IPR001841 -
Spst2g02366 203 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 197 IPR033276 GO:0004842|GO:0016567|GO:0046621
Spst2g02366 203 ProSiteProfiles Zinc finger RING-type profile. 151 191 IPR001841 -
Spst2g02366 203 FunFam E3 ubiquitin ligase BIG BROTHER 113 196 - -
Spst2g02366 203 SUPERFAMILY RING/U-box 150 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02366 Spst-Chr2 23213230 23215950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02366 9 202 C3H Transcription Factor Family AT3G63530 45.918 6.92e-56 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02366 K19045 - gmx:100793907 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00380 5 3120192 3124434 Spst2g02366 2 23213230 23215950 PCT