Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst2g02361 | ATGGCGTCGATGGCGATAGAGGAAGTGCGAACACTCTGGATCGGCGATTTGCAGTACTGGGTGGATGAGTCGTATCTCTCGCAGTGCTTCGCCCACAGCGGCGAAGTGGTTTCCATCAAAATCATTCGCAACAAGATGACGGGCCAGCCCGAGGGCTACGGCTTCGTGGAGTTCGTTTCTCACGCGGCGGCGGAGGCCTTTCTCCGCACCTACAACGGCACCCAAATGCCCGGCACGGAACAGACCTTCCGGCTCAATTGGGCCTCCTTCGGGGACTCTGGGCCCGACCACTCCATCTTCGTCGGCGATCTCGCCCCCGACGTCACCGACTTTCTCCTCCAGGAGACTTTTCGGACCCATTATCCTTCTGTCAAAGGGGCCAAAGTTGTCACCGACCCCGCCACCGGCCGCTCCAAGGGCTATGGCTTTGTTAAGTTCACCGACGAGACGCAGAGGAACCGCGCCATGACTGAAATGAACGGCGTTTATTGCTCCACGCGCCCTATGCGTATCAGCGCCGCTACACCTAAGAAGAACGCTTCTTTTCAACACCAATATGCTCCACCTAAAGCAATTTATCAATTTCCTGCATACACTGCTCCGGTGAATACTGTTGCTCCAGAAAATGATGTGAATAATACCACTGTTTGTATTGGTAATTTGGATCTTAATGTGACTGAGGAGGAGCTTAGGCAAACCTTTACCCAATTTGGAGATATTGTGTCGGTCAAAATTTATGCGGGCAAAGGATATGGTTATGTTCAATTTGGAACTAGAGCGACTGCTGAAGATGCCATTCAGAGGATGCATGGAAAGATAATAGGTCAACAAGTGGTCCAAATTTCTTGGGCTAGTACCTTGGCAGCTAGACAGGATGTACCCGGTGGCTGGGGTGCGCAGATGGATCCAAATCAATGGAATGCCTATTATGGATATGGACAGGGTTATGAGGCATATGCTTATGGTGCTGCTCATGATCCCACCTTGTATGCTTATGGTGCATACGCTGGTTATGCACAATACCCTCAACAGGTTGAAGGTGGTCAAGACATGTCAGTGTCTATGCCTGTTGAGGAGTCCTATGATCCCCTTGCATTGCCTGATGTGGATAAATTAAATGCTGCATATCTTTCAACGCATGGAAGTTCCATTTTAGGGCGGTCCCTTTGGCAGAGAACTTCCCAATCTTTACAGCAAGCATAG | 1203 | 0.5046 | MASMAIEEVRTLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKMTGQPEGYGFVEFVSHAAAEAFLRTYNGTQMPGTEQTFRLNWASFGDSGPDHSIFVGDLAPDVTDFLLQETFRTHYPSVKGAKVVTDPATGRSKGYGFVKFTDETQRNRAMTEMNGVYCSTRPMRISAATPKKNASFQHQYAPPKAIYQFPAYTAPVNTVAPENDVNNTTVCIGNLDLNVTEEELRQTFTQFGDIVSVKIYAGKGYGYVQFGTRATAEDAIQRMHGKIIGQQVVQISWASTLAARQDVPGGWGAQMDPNQWNAYYGYGQGYEAYAYGAAHDPTLYAYGAYAGYAQYPQQVEGGQDMSVSMPVEESYDPLALPDVDKLNAAYLSTHGSSILGRSLWQRTSQSLQQA | 400 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst2g02361 | 400 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 7 | 287 | - | - | |
Spst2g02361 | 400 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 78 | IPR035979 | GO:0003676 | |
Spst2g02361 | 400 | CDD | RRM1_SECp43_like | 11 | 91 | - | - | |
Spst2g02361 | 400 | Gene3D | - | 9 | 89 | IPR012677 | - | |
Spst2g02361 | 400 | FunFam | polyadenylate-binding protein RBP45 | 197 | 293 | - | - | |
Spst2g02361 | 400 | SUPERFAMILY | RNA-binding domain, RBD | 194 | 315 | IPR035979 | GO:0003676 | |
Spst2g02361 | 400 | CDD | RRM2_SECp43_like | 96 | 175 | - | - | |
Spst2g02361 | 400 | FunFam | Polyadenylate-binding protein RBP47B | 89 | 187 | - | - | |
Spst2g02361 | 400 | SMART | rrm1_1 | 11 | 86 | IPR000504 | GO:0003723 | |
Spst2g02361 | 400 | SMART | rrm1_1 | 215 | 282 | IPR000504 | GO:0003723 | |
Spst2g02361 | 400 | SMART | rrm1_1 | 98 | 172 | IPR000504 | GO:0003723 | |
Spst2g02361 | 400 | Gene3D | - | 96 | 173 | IPR012677 | - | |
Spst2g02361 | 400 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 214 | 286 | IPR000504 | GO:0003723 | |
Spst2g02361 | 400 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 10 | 90 | IPR000504 | GO:0003723 | |
Spst2g02361 | 400 | SUPERFAMILY | RNA-binding domain, RBD | 95 | 184 | IPR035979 | GO:0003676 | |
Spst2g02361 | 400 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 12 | 80 | IPR000504 | GO:0003723 | |
Spst2g02361 | 400 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 216 | 279 | IPR000504 | GO:0003723 | |
Spst2g02361 | 400 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 99 | 164 | IPR000504 | GO:0003723 | |
Spst2g02361 | 400 | FunFam | Polyadenylate-binding protein RBP47B | 9 | 88 | - | - | |
Spst2g02361 | 400 | Gene3D | - | 199 | 291 | IPR012677 | - | |
Spst2g02361 | 400 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 97 | 176 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst2g02361 | Spst-Chr2 | 23135022 | 23138092 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst2g02361 | 9 | 303 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 26.623 | 1.31e-23 | 101 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst2g02361 | - | - | gmx:100813616 | 729.939 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst5g00384 | 5 | 3159929 | 3162407 | Spst2g02361 | 2 | 23135022 | 23138092 | PCT |