Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02324 ATGAATTCGGACACGCAACACGGAACGCCGTCGTATTGGTGCTACAGCTGCACTCGCTTTGTTCACCTCTCATCGCAATCTACCATCGCCTGTCCCCACTGCCAGAGAGGCTTTGTCGAAGAGATCCGCGCCGACGCCTCGCCGCGTCACCGTCTTAGCCCTTTCCCCGACAACCATCTTTCTCTCCGCCGACAGGGCTTCCGCCGCCGTCGCCGCGACGCCGCCGGCAGCCGCTCTCCCTTCAACCCTGTCATCGTGCTTCGCGGCCCCGGCGATGACTCCGCCGCCGAACAAGAAGGTGCCAGCACCTTTGAGCTCTTCTACGATGATGGCGATGGCACTGGACTTCGCCCCCTCCCGCCCACCATGTCGGAGTTCCTCCTCGGCTCCGGCTTCGATCGCCTCCTCGAGCAGTTCGCGCAGATCGAGATGAACGGCTTCGGCCGCCCGGAGAATCCACCGGCGTCCAAGGCGGCGATCGAGTCCATGCCGACGATTGAGATCGGCGAAGCGCAGGTCCATATTGACGCTCACTGCGCCGTGTGTAAGGAGGCGTTTGAGCTCCACGCGGAGGCGCGTGAGTTACCCTGCAAACACATTTACCACTCCGATTGCATCCTCCCGTGGCTTTCCATGCGGAACTCGTGCCCGGTGTGCCGCCACGAGCTTCCTTCCGATTTGGAAACTAGGGTTCCGAGTCAGATCGACGAGGAGGCGATAGGGTTAACTATCTGGAGGCTTCCCGGCGGGGGATTTGCCGTGGGGCGTTTTTCCGGTGGCCGGAGAGCCGGCGAGAATAATTTCCCGGTGGTGTACACGGAGATGGACGGTGGGCTGAACACGAACGGAGCTCCAAGGAGGATTTCTCGGTCGGTGAGAAGCAACAGGGTTAGGGAGAGTCGAGGGTTTGGTAGGGTTATTCGCAATTTCTTTTCATTCTTTGGAAGAATCGGTTCTAGAAACTCTTCTTCTTCGTCGCTCTCATCTTCTGAACATGCTTCTATGAGTAGAAGCCGCAGTCAAGCGAGTTCAGTCTTCAATAGAAGCTCGCGGAGCAGAACCTTTGTCTTGGATGATTAA 1080 0.5852 MNSDTQHGTPSYWCYSCTRFVHLSSQSTIACPHCQRGFVEEIRADASPRHRLSPFPDNHLSLRRQGFRRRRRDAAGSRSPFNPVIVLRGPGDDSAAEQEGASTFELFYDDGDGTGLRPLPPTMSEFLLGSGFDRLLEQFAQIEMNGFGRPENPPASKAAIESMPTIEIGEAQVHIDAHCAVCKEAFELHAEARELPCKHIYHSDCILPWLSMRNSCPVCRHELPSDLETRVPSQIDEEAIGLTIWRLPGGGFAVGRFSGGRRAGENNFPVVYTEMDGGLNTNGAPRRISRSVRSNRVRESRGFGRVIRNFFSFFGRIGSRNSSSSSLSSSEHASMSRSRSQASSVFNRSSRSRTFVLDD 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02324 359 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Spst2g02324 359 CDD RING-H2_RNF126-like 179 220 - -
Spst2g02324 359 FunFam E3 ubiquitin-protein ligase RING1-like 141 226 - -
Spst2g02324 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 226 IPR013083 -
Spst2g02324 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 55 224 - -
Spst2g02324 359 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Spst2g02324 359 SMART ring_2 179 219 IPR001841 -
Spst2g02324 359 MobiDBLite consensus disorder prediction 319 352 - -
Spst2g02324 359 Pfam Ring finger domain 178 220 IPR001841 -
Spst2g02324 359 MobiDBLite consensus disorder prediction 319 359 - -
Spst2g02324 359 Pfam Protein of unknown function (DUF1117) 240 351 IPR010543 -
Spst2g02324 359 SUPERFAMILY RING/U-box 159 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02324 Spst-Chr2 22604739 22605818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02324 118 226 C3H Transcription Factor Family AT5G01980 45.872 3.23e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02324 K11982 - gmx:100792874 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00405 5 3254605 3255591 Spst2g02324 2 22604739 22605818 PCT