Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst2g02324 | ATGAATTCGGACACGCAACACGGAACGCCGTCGTATTGGTGCTACAGCTGCACTCGCTTTGTTCACCTCTCATCGCAATCTACCATCGCCTGTCCCCACTGCCAGAGAGGCTTTGTCGAAGAGATCCGCGCCGACGCCTCGCCGCGTCACCGTCTTAGCCCTTTCCCCGACAACCATCTTTCTCTCCGCCGACAGGGCTTCCGCCGCCGTCGCCGCGACGCCGCCGGCAGCCGCTCTCCCTTCAACCCTGTCATCGTGCTTCGCGGCCCCGGCGATGACTCCGCCGCCGAACAAGAAGGTGCCAGCACCTTTGAGCTCTTCTACGATGATGGCGATGGCACTGGACTTCGCCCCCTCCCGCCCACCATGTCGGAGTTCCTCCTCGGCTCCGGCTTCGATCGCCTCCTCGAGCAGTTCGCGCAGATCGAGATGAACGGCTTCGGCCGCCCGGAGAATCCACCGGCGTCCAAGGCGGCGATCGAGTCCATGCCGACGATTGAGATCGGCGAAGCGCAGGTCCATATTGACGCTCACTGCGCCGTGTGTAAGGAGGCGTTTGAGCTCCACGCGGAGGCGCGTGAGTTACCCTGCAAACACATTTACCACTCCGATTGCATCCTCCCGTGGCTTTCCATGCGGAACTCGTGCCCGGTGTGCCGCCACGAGCTTCCTTCCGATTTGGAAACTAGGGTTCCGAGTCAGATCGACGAGGAGGCGATAGGGTTAACTATCTGGAGGCTTCCCGGCGGGGGATTTGCCGTGGGGCGTTTTTCCGGTGGCCGGAGAGCCGGCGAGAATAATTTCCCGGTGGTGTACACGGAGATGGACGGTGGGCTGAACACGAACGGAGCTCCAAGGAGGATTTCTCGGTCGGTGAGAAGCAACAGGGTTAGGGAGAGTCGAGGGTTTGGTAGGGTTATTCGCAATTTCTTTTCATTCTTTGGAAGAATCGGTTCTAGAAACTCTTCTTCTTCGTCGCTCTCATCTTCTGAACATGCTTCTATGAGTAGAAGCCGCAGTCAAGCGAGTTCAGTCTTCAATAGAAGCTCGCGGAGCAGAACCTTTGTCTTGGATGATTAA | 1080 | 0.5852 | MNSDTQHGTPSYWCYSCTRFVHLSSQSTIACPHCQRGFVEEIRADASPRHRLSPFPDNHLSLRRQGFRRRRRDAAGSRSPFNPVIVLRGPGDDSAAEQEGASTFELFYDDGDGTGLRPLPPTMSEFLLGSGFDRLLEQFAQIEMNGFGRPENPPASKAAIESMPTIEIGEAQVHIDAHCAVCKEAFELHAEARELPCKHIYHSDCILPWLSMRNSCPVCRHELPSDLETRVPSQIDEEAIGLTIWRLPGGGFAVGRFSGGRRAGENNFPVVYTEMDGGLNTNGAPRRISRSVRSNRVRESRGFGRVIRNFFSFFGRIGSRNSSSSSLSSSEHASMSRSRSQASSVFNRSSRSRTFVLDD | 359 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst2g02324 | 359 | ProSiteProfiles | Zinc finger RING-type profile. | 179 | 220 | IPR001841 | - | |
Spst2g02324 | 359 | CDD | RING-H2_RNF126-like | 179 | 220 | - | - | |
Spst2g02324 | 359 | FunFam | E3 ubiquitin-protein ligase RING1-like | 141 | 226 | - | - | |
Spst2g02324 | 359 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 145 | 226 | IPR013083 | - | |
Spst2g02324 | 359 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 55 | 224 | - | - | |
Spst2g02324 | 359 | Pfam | zinc-ribbon | 11 | 42 | IPR039525 | GO:0061630 | |
Spst2g02324 | 359 | SMART | ring_2 | 179 | 219 | IPR001841 | - | |
Spst2g02324 | 359 | MobiDBLite | consensus disorder prediction | 319 | 352 | - | - | |
Spst2g02324 | 359 | Pfam | Ring finger domain | 178 | 220 | IPR001841 | - | |
Spst2g02324 | 359 | MobiDBLite | consensus disorder prediction | 319 | 359 | - | - | |
Spst2g02324 | 359 | Pfam | Protein of unknown function (DUF1117) | 240 | 351 | IPR010543 | - | |
Spst2g02324 | 359 | SUPERFAMILY | RING/U-box | 159 | 227 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst2g02324 | Spst-Chr2 | 22604739 | 22605818 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst2g02324 | 118 | 226 | C3H Transcription Factor Family | AT5G01980 | 45.872 | 3.23e-27 | 110 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst2g02324 | K11982 | - | gmx:100792874 | 560.451 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst5g00405 | 5 | 3254605 | 3255591 | Spst2g02324 | 2 | 22604739 | 22605818 | PCT |