Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02309 ATGAAGGTCCATGGCATTGGTAACAGTAACAGTGGTAGTGGTTTTGTGGGTGCGGCTCGAGAGAGAGAGGAAAGGAAAGAAAAAGGTCATAGAATTCCGTCCACCCTTTCTCACGGACCAATCGCCTCTCATCTCCTTTTCAACTTCCAGAGTGAAAGGAAAAGGAAAATGGCAAAAACTTTGCTCTGCATTGTCTTCACTATCTCCATAACATGGATGGTCGAAGCTCGAATTCCAGGGATTTACTCTGGCGGTGCATGGGAAAGTGCTCACGCCACCTTCTACGGAGGATCCGATGCTTCCGGCACCATGGGGGGAGCGTGTGGGTATGGGAACCTGTACAGTCAAGGGTACGGTGTGAACACGGCGGCATTGAGCACGGCGCTTTTCAACAACGGCCTTAGCTGCGGCGCCTGCTTTGAGATAAAGTGCGCGAACGACAAACAGTGGTGTCATTCCGGAAGTCCTTCCATCTTCATCACCGCAACAAACTTTTGCCCTCCCAACTACGCTCTTCCTAACGACAATGGCGGCTGGTGCAACCCTCCTCGTCCTCACTTCGACCTCGCCATGCCCATGTTCCTCAAAATTGCCGAATACCGCGCAGGAATTGTCCCTGTTGCCTTTCGCCGGGTGCCATGTAGAAAGCACGGAGGGATAAGGTTCACCATCAACGGATTCCGTTACTTTAACCTCGTGCTGATTAGCAACGTGGCGGGTGCGGGTGATATCGTGCGCACTTACGTGAAGGGGTCCCGAACCGGGTGGATGCCAATGAGCCGGAACTGGGGCCAGAACTGGCAGTCAAACGCGGTTTTGGTGGGGCAGGCGCTGTCGTTTCGCGTCACGGGCAGCGACCGCCGCACCTCCACCTCCTGGAACATCGCCCCACCCAATTGGCAATTCGGTCAAACTTTCACCGGAAAAAATTTCAGAGTCTGA 942 0.5382 MKVHGIGNSNSGSGFVGAAREREERKEKGHRIPSTLSHGPIASHLLFNFQSERKRKMAKTLLCIVFTISITWMVEARIPGIYSGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDKQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKHGGIRFTINGFRYFNLVLISNVAGAGDIVRTYVKGSRTGWMPMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIAPPNWQFGQTFTGKNFRV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02309 313 SMART dpbb_1 122 209 IPR007112 -
Spst2g02309 313 MobiDBLite consensus disorder prediction 1 15 - -
Spst2g02309 313 FunFam Expansin 76 215 - -
Spst2g02309 313 CDD DPBB_EXPA_N 87 214 - -
Spst2g02309 313 FunFam Expansin 219 311 - -
Spst2g02309 313 PRINTS Expansin signature 144 155 IPR002963 GO:0009664
Spst2g02309 313 PRINTS Expansin signature 158 168 IPR002963 GO:0009664
Spst2g02309 313 PRINTS Expansin signature 194 207 IPR002963 GO:0009664
Spst2g02309 313 PRINTS Expansin signature 265 286 IPR002963 GO:0009664
Spst2g02309 313 PRINTS Expansin signature 117 131 IPR002963 GO:0009664
Spst2g02309 313 PRINTS Expansin signature 218 230 IPR002963 GO:0009664
Spst2g02309 313 PRINTS Expansin signature 294 310 IPR002963 GO:0009664
Spst2g02309 313 PRINTS Expansin signature 177 194 IPR002963 GO:0009664
Spst2g02309 313 PRINTS Expansin signature 230 251 IPR002963 GO:0009664
Spst2g02309 313 Pfam Expansin C-terminal domain 220 297 IPR007117 -
Spst2g02309 313 PANTHER EXPANSIN-A15 62 311 IPR002963 GO:0009664
Spst2g02309 313 PRINTS Expansin/Lol pI family signature 86 101 IPR007118 GO:0005576
Spst2g02309 313 PRINTS Expansin/Lol pI family signature 126 144 IPR007118 GO:0005576
Spst2g02309 313 PRINTS Expansin/Lol pI family signature 256 270 IPR007118 GO:0005576
Spst2g02309 313 PRINTS Expansin/Lol pI family signature 202 218 IPR007118 GO:0005576
Spst2g02309 313 PRINTS Expansin/Lol pI family signature 294 308 IPR007118 GO:0005576
Spst2g02309 313 PRINTS Expansin/Lol pI family signature 104 122 IPR007118 GO:0005576
Spst2g02309 313 SUPERFAMILY PHL pollen allergen 216 308 IPR036749 -
Spst2g02309 313 Gene3D - 76 215 IPR036908 -
Spst2g02309 313 Pfam Lytic transglycolase 122 208 IPR009009 -
Spst2g02309 313 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 105 219 IPR007112 -
Spst2g02309 313 Gene3D - 219 311 IPR036749 -
Spst2g02309 313 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 229 308 IPR007117 -
Spst2g02309 313 SUPERFAMILY Barwin-like endoglucanases 63 237 IPR036908 -
Spst2g02309 313 MobiDBLite consensus disorder prediction 1 35 - -
Spst2g02309 313 MobiDBLite consensus disorder prediction 18 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02309 Spst-Chr2 22391450 22393792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02309 57 313 Expansin Gene Family AT2G39700 84.047 1.99e-164 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02309 - - gmx:100809139 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00421 5 3344031 3344976 Spst2g02309 2 22391450 22393792 PCT