Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02298 ATGGAGGACGATAACGCGAGCAAGGTGATTGAGCTGGTGAACGAGGTAGCGGGTATCTCCGATTACAGGCCTCCGGTGAAGAAGCAGTACTGCAACTTGGCGCGGAGGTTGAAGCTACTGATCCCGATGTTTGAAGAGATTAGGGACATGAAAGACGCCATCCCCGAGGACACTTCCAAAGCGGTCCTCGCCTTCAAGGAAGCTCTCGAATCAGCCAAGGAACTTCTCAGATTCGGAAGTGAAGGCAGCAAGCTTTACTTGGTCCTTGAGCGGGATGGAATTATGAATAAATTCTACGAGGTGACAGCTCGGTTGGAACAGTCACTGGGTGGTATTTCCTATGATAAACTTGATATATCAGATGAAGTTAAAGAGCAGGTTGAACTGGTTCTTGCCCAGTTCAGAAGAGCTAAAGGGAGGGTTGATGAACTAGATGTTAGGTTGTATGAGGATATGTTGTCCCTCTACAACAACAGCAATGATGCAGCTACAGATCCATCTGTTCTAAGTCGATTAGCTGAGAAATTGCAACTGATGGGAATAGCTGATCTTACACAGGAATCACTTGCTTTGCATGAGATGGTGGCATCAAGTGGTGGGGATCCTGGGGCACGGATCGAGAAAATATCCATGTTACTGAAGAAGATAAAGGATTACGTTCAAACAGAAAATCTAGTTAAGGATGATAATTTAGGAGGAAAAGGCATTTTTGCAAAAGTCTATGGAGTTGGGACAAATGAAAAGAGTCATCAGGCTCCTGTTATCCCTGATGATTTTCGATGTCCAATATCCCTGGAATTAATGAAGGATCCTGTCATTGTTTCAACCGGACAGACTTATGAGCGTGCTTGTATTGAGAAGTGGTTGCAAGCAGGGCACGGGACATGCCCCAAAACACAGCAGACTCTCACTAGCACCGTTCTCACACCCAACTATGTCCTACGAAGCCTCATAGCACAATGGTGTGAAGCCAATGGCATAGAGCCACCTAAACGACACAGCAGTTCACAACCAAGTAAATCAGCATCAGCCTACTCACCTGCTGAGAGAAGTAAGATAGACAGTCTTCTCCAAAAGCTCACATCTGGCAGTCCTGAAGACCAGAGATCAGCTGCTGGTGAGATCCGCCTTCTTGCAAAGCGGAATGCAGATAACCGTGTTGCCATTGCTGAAGCTGGTGCAATACCTCTCCTTGTTGGTCTCTTGTCAGTGCCTGACTCCCGCACTCAAGAACATGCTGTGACTGCGCTTCTGAATCTTTCCATATATGAAAATAACAAAGGAAGCATTGTTTCTTCAGGAGCAGTTCCAGGTATAGTTCATGTGCTGAAGAAGGGAAGCATGGAAGCGCGGGAAAATGCTGCAGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAACAAGGTTACGATCGGATCTTCAGGTGCCATACCACCACTAGTGACACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATTTACCAGGGAAACAAGGGAAAGGCAGTGAGGGCTGGCGTTATTCCCACACTGATGCGACTGCTGACTGAACCCAGTGGGGGAATGGTGGATGAAGCACTAGCTATTTTGGCAATATTGGCCAGCCATCCTGATGGGAAGGCTACCATTAGAGCTGCTGAGGCAGTGCCAGTTTTAGTAGAGTTTATTGGGTCTGGTTCCCCAAGGAACAAAGAGAATGCAGCTGCTGTTTTAGTTCACCTCTGCTCTGGAGATCAACAATATCTAGTACAAGCCCAAGAGCTGGGGGTGATGGGTCCACTGTTGGAGTTGGCTCAAAATGGTACAGACAGAGGCAAAAGAAAGGCTGCACAATTACTAGAGCGTATGAGCAGGTTACCTGAGCAACAGCAGGAAGTTCCAACACAAACTGAAACTCAAGCCCAGAACGAAGATACCCAACCACCTTTCATTACTAACCCCGATGATTCCTAA 1983 0.468 MEDDNASKVIELVNEVAGISDYRPPVKKQYCNLARRLKLLIPMFEEIRDMKDAIPEDTSKAVLAFKEALESAKELLRFGSEGSKLYLVLERDGIMNKFYEVTARLEQSLGGISYDKLDISDEVKEQVELVLAQFRRAKGRVDELDVRLYEDMLSLYNNSNDAATDPSVLSRLAEKLQLMGIADLTQESLALHEMVASSGGDPGARIEKISMLLKKIKDYVQTENLVKDDNLGGKGIFAKVYGVGTNEKSHQAPVIPDDFRCPISLELMKDPVIVSTGQTYERACIEKWLQAGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGIEPPKRHSSSQPSKSASAYSPAERSKIDSLLQKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPDGKATIRAAEAVPVLVEFIGSGSPRNKENAAAVLVHLCSGDQQYLVQAQELGVMGPLLELAQNGTDRGKRKAAQLLERMSRLPEQQQEVPTQTETQAQNEDTQPPFITNPDDS 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02298 660 FunFam RING-type E3 ubiquitin transferase 2 115 - -
Spst2g02298 660 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515
Spst2g02298 660 Pfam Armadillo/beta-catenin-like repeat 547 586 IPR000225 GO:0005515
Spst2g02298 660 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515
Spst2g02298 660 MobiDBLite consensus disorder prediction 330 348 - -
Spst2g02298 660 MobiDBLite consensus disorder prediction 627 660 - -
Spst2g02298 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 435 IPR000225 GO:0005515
Spst2g02298 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Spst2g02298 660 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Spst2g02298 660 CDD RING-Ubox_PUB 256 308 IPR045210 -
Spst2g02298 660 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Spst2g02298 660 Gene3D - 4 114 IPR036537 GO:0007166
Spst2g02298 660 Gene3D - 339 490 IPR011989 -
Spst2g02298 660 Gene3D - 491 639 IPR011989 -
Spst2g02298 660 SMART arm_5 423 463 IPR000225 GO:0005515
Spst2g02298 660 SMART arm_5 588 628 IPR000225 GO:0005515
Spst2g02298 660 SMART arm_5 464 504 IPR000225 GO:0005515
Spst2g02298 660 SMART arm_5 505 545 IPR000225 GO:0005515
Spst2g02298 660 SMART arm_5 546 586 IPR000225 GO:0005515
Spst2g02298 660 SMART arm_5 382 422 IPR000225 GO:0005515
Spst2g02298 660 FunFam RING-type E3 ubiquitin transferase 255 328 - -
Spst2g02298 660 PANTHER U BOX DOMAIN-CONTAINING 25 628 - -
Spst2g02298 660 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Spst2g02298 660 FunFam RING-type E3 ubiquitin transferase 530 647 - -
Spst2g02298 660 SUPERFAMILY ARM repeat 353 635 IPR016024 -
Spst2g02298 660 SUPERFAMILY RING/U-box 245 330 - -
Spst2g02298 660 MobiDBLite consensus disorder prediction 623 660 - -
Spst2g02298 660 FunFam RING-type E3 ubiquitin transferase 430 529 - -
Spst2g02298 660 MobiDBLite consensus disorder prediction 328 348 - -
Spst2g02298 660 FunFam RING-type E3 ubiquitin transferase 335 429 - -
Spst2g02298 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
Spst2g02298 660 CDD MLKL_NTD 27 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02298 Spst-Chr2 22244675 22248807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02298 1 660 U-box Gene Family AT3G46510 70.120 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02298 - - gmx:100812160 1193.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02298 2 22244675 22248807 Spst2g02298 2 22244675 22248807 ECH