Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02273 ATGTCTTCTGATTCTAATAATCGCAAGAATCCTGCGCAGTGGAAGCTAGAAGAGGTTGTTTCAATTGTAATAGTCTTTGTTATCTTTTTTACACTGAGTGATTGCTTCGGCACATTGAAGCGTCTATTATGTGGAATTTACCGAGGAAGAAACCAGGTTCAAAGGAGACTTCTAGATGAGACCGTTCCCGATGATGATCCTTCCATGCAGGTTCAAAGCCGAGGATTGGAGTTGTGTGTGGTGCAGTCTCTTCCAACGATTGAGTTCAAGAAAAACGAGGGAGAACAAGACAAGGGGAGTAACATGGAATGTGCTATTTGTCTCGCAGAGTTTGAGGAAGGGGAGTGGCTGAAACATCTTCCACAATGCAGCCACAGCTTCCATGTTTCATGCGTTGACACGTGGTTTCAGTCTCATTCAAATTGTCCTCTTTGTAGAGCATTTGTGCATCATCACATGCTACAGTGTTCCGTACCTGCTTCTCACACATTGCTACAGCCTTTGAGGAGGGAAGACTTTGAAAGGGTTCAATTCATTTCCCCTGGAAATCTACCTATTACACAACATCAACGGTTTCTTCCCGTTTAA 588 0.4354 MSSDSNNRKNPAQWKLEEVVSIVIVFVIFFTLSDCFGTLKRLLCGIYRGRNQVQRRLLDETVPDDDPSMQVQSRGLELCVVQSLPTIEFKKNEGEQDKGSNMECAICLAEFEEGEWLKHLPQCSHSFHVSCVDTWFQSHSNCPLCRAFVHHHMLQCSVPASHTLLQPLRREDFERVQFISPGNLPITQHQRFLPV 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02273 195 PANTHER RING-H2 FINGER PROTEIN ATL16 20 158 IPR044600 GO:0016567|GO:0016740
Spst2g02273 195 CDD RING-H2_EL5-like 103 146 - -
Spst2g02273 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 151 IPR013083 -
Spst2g02273 195 FunFam E3 ubiquitin-protein ligase ATL6 65 152 - -
Spst2g02273 195 Pfam Ring finger domain 103 146 IPR001841 -
Spst2g02273 195 SMART ring_2 104 145 IPR001841 -
Spst2g02273 195 SMART FANCL_C_2 100 154 - -
Spst2g02273 195 SUPERFAMILY RING/U-box 81 152 - -
Spst2g02273 195 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02273 Spst-Chr2 21893559 21894146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02273 22 159 C3H Transcription Factor Family AT1G72220 33.566 9.90e-25 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02273 - - gmx:121172630 273.863