Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02258 ATGCAAATAACCAGTGCATTAGCGAAAGGCAACCCTCTTCTTACCCCCTTATCTAGATTTCTCTGTATGCGTCATCATTCATCAACCAACTTGTTTGTCACGGGGCTTTCCTATGATACAAATGAACCGATTCTGAGAGATGCATTTGATAAGCATGGTGAAATCACCGAAGTTAGAGTAATATGTGATCACGTAACTGGGAAATCAAGAGGTTATGGATTTGTGCGGTTCGTTTCTGAAACTATAGCTGCTACAGCTCGCAAAGAAATGAACGGCCAGGTTTTTATTTTCTTTCATTTCCCCTGTTTGTTGAACATGAATTGA 324 0.4012 MQITSALAKGNPLLTPLSRFLCMRHHSSTNLFVTGLSYDTNEPILRDAFDKHGEITEVRVICDHVTGKSRGYGFVRFVSETIAATARKEMNGQVFIFFHFPCLLNMN 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02258 107 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 95 IPR000504 GO:0003723
Spst2g02258 107 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 21 94 - -
Spst2g02258 107 SMART rrm1_1 30 99 IPR000504 GO:0003723
Spst2g02258 107 Gene3D - 17 97 IPR012677 -
Spst2g02258 107 SUPERFAMILY RNA-binding domain, RBD 26 95 IPR035979 GO:0003676
Spst2g02258 107 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02258 Spst-Chr2 21765314 21765863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02258 24 92 Eukaryotic Initiation Factors Gene Family AT3G11400 44.928 6.94e-12 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02258 K13195 - gmx:100306540 157.532