Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02232 ATGGGACGTGGGAAGATTGAGATAAAGAGGATCGAGAACACCACCACAAGGCAAGTTACCTTCTCCAAAAGAAGAGGTGGTCTCATGAAGAAGACAAAGGAACTTTCTGTGCTCTGTGATGCACAGATCGGGATCATCATCTTCTCCAGCACTGGGAAGATGTGGCAATGGTGCACTGAACCCTTCAGGATGGAGCAGATCATAGAGAAGTATCAGAGATCAACTGGAGTTCGCATTGCTGAACGTGACCATCCCCGTGAAGAATTTATCCATGACATGGCAATGCTGAGGCAAGAAACTCTCCGTCTTGAATTGGGAATTCAAAGGTATCTTGGAGAGGACATGGGGTGTTTACAGTATGAGGATTTGACTAAACTTGAACAAGAATTGGAAAATTCTGTGGCAAAGGTTCGAAATCGTCAGAATGAGCTCCTGCAACAACAAATGGAGAATCTGCGAAGGAAGTTGGGAAGATGTCAGGAACAGAGAGCAGTGTTGGAGGCAACAGTGGAAGGAAGCAAAGGAGTGCATGTGATGGATGAGTTTCCATTCTTTGAAGAGCAACCTTCTGCTGGTAGCATCCTTCAACTTGCTTCCCCTGTGCTTCCTCACTTTCACCCTTATCTTCAGCTCGCTCAACCCAACATCAACACTCACTCACCCTCCCACCACCATAACCATAATATCTGTGAGGTTTAG 699 0.4607 MGRGKIEIKRIENTTTRQVTFSKRRGGLMKKTKELSVLCDAQIGIIIFSSTGKMWQWCTEPFRMEQIIEKYQRSTGVRIAERDHPREEFIHDMAMLRQETLRLELGIQRYLGEDMGCLQYEDLTKLEQELENSVAKVRNRQNELLQQQMENLRRKLGRCQEQRAVLEATVEGSKGVHVMDEFPFFEEQPSAGSILQLASPVLPHFHPYLQLAQPNINTHSPSHHHNHNICEV 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02232 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst2g02232 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 206 - -
Spst2g02232 232 Coils Coil 120 169 - -
Spst2g02232 232 Pfam K-box region 85 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst2g02232 232 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Spst2g02232 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst2g02232 232 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Spst2g02232 232 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Spst2g02232 232 ProSiteProfiles K-box domain profile. 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst2g02232 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Spst2g02232 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst2g02232 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst2g02232 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02232 Spst-Chr2 21426510 21430778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02232 1 216 MADS-box Gene Family AT5G23260 43.600 2.50e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst2g02232 K-box 3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02232 - - gmx:100783876 323.168