Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02226 ATGGCTGGTAAAAGTTCAATTACTCAGCCAGCAGCCAGACATGGCACCAACAAACTGACCAAATATGATATAGCTGATCTAGAATGGACCAATAGGATTCCAGAGTGTCCAACATACTACCCATCAGAGCATGAGTTTGACCATCCTTTAGTTTATCTGCAGAAGATAGCTCCTGAGGCTTCTAAATATGGTATTCCTTCTTCATGTGTGGAAAAGGAGTTCTGGCATGAGATGACTCATGGAGAAAAGGGAACAGTTGAGTACGGAGTCAATGTTGAAGGTAGTGCCTTTTCATGTGATCCTGATGACAGGCTTGGAACAAGTGCAAGTAAAACTTGGTATGGTGTGCCTGGCTATGCAGCCTCTCAATTTGAAAATACCGTCTTACAACATGTGTATTGCAATAAGATCTTAACAAAACATGGAAAGGATGGAGCTTTCAAGTTTCTTGCACAAAAAACAACCATGTTCCCACCAAATATAATGTTACAACATGATGTGGAAGTTTACAAGGCTGAGCAGAAGCCGGGAGAGTTTATCATAACCTTTCCCAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCTAATGGTGATTGGTTTCCACTTGGGGCTGCAGCTAGCAGGCGTTATGCACTTCTGAGAATGATGCCTTTAATTCCATACGAGGAACTTCTTTGTAAAGAGGCAATGTCTGTTTACATGTCCTCAAGTGTCAGAAGTGCCAAGAACAAGCCTGAAGACACAGCATCTTATAAATCTATAATGCAGCCTTTCTCGCACCTTATGCAATTTTATAAGACATCCCTTTTGCGACGGAAGAGTTCAAGAAACTTGCCAAGTTCTTCAAATACACCAGGTTTTCTTTTGTGTGGCATATGCCACAGGGATTGTTATGTAGCTTACCTGCTGTGCAAGTACTGCTTATCTCACCCAATTTGTCTCTTCCATGGTAAGACATCATTCATATATTCATTTTGCTTTCAGTTACGACTTAGATGTAGACTTCATTATGATTTGAGACGTGCTAACTTTCAGTTTGTCAGCAACAAGATGAATTGGGACTTAATGACATGTTTTTTTGGCTCTGCTGTTTATTATTGGCATGCAGACATTGCACCACATACTTGTATATGTGGGAGAGATTATTCTATTTTCAAAAGGAATGACATTTTCGCACTGGAAGAAGCTGCCAAAAGTTTTCAACAGGTAAAAGAATGCAATGACACATTCTCCCTATCAAGTACATGTTTCTGTAAGAGAAATGAATGCATCAAAGATCTTGAGGATCCTTGGCACGAAGAGAGTGTAAGCGAAACTGAAAATGCTCTAGGGGCAGCATCTAAACCGAAAATAAAAGTAGCTGACTACATCAAGCACAGTGTTGAAAATAAGACGACAAAGCATTGGAGAAACGATAGATCTGCGAAGGGTACCAATAGGCCAGAAATAATTTATAACCTGAGAAAACGCAAATCAGATTTGATTCTATGA 1518 0.3992 MAGKSSITQPAARHGTNKLTKYDIADLEWTNRIPECPTYYPSEHEFDHPLVYLQKIAPEASKYGIPSSCVEKEFWHEMTHGEKGTVEYGVNVEGSAFSCDPDDRLGTSASKTWYGVPGYAASQFENTVLQHVYCNKILTKHGKDGAFKFLAQKTTMFPPNIMLQHDVEVYKAEQKPGEFIITFPRAYHAGFSHGFNCGEAVNFANGDWFPLGAAASRRYALLRMMPLIPYEELLCKEAMSVYMSSSVRSAKNKPEDTASYKSIMQPFSHLMQFYKTSLLRRKSSRNLPSSSNTPGFLLCGICHRDCYVAYLLCKYCLSHPICLFHGKTSFIYSFCFQLRLRCRLHYDLRRANFQFVSNKMNWDLMTCFFGSAVYYWHADIAPHTCICGRDYSIFKRNDIFALEEAAKSFQQVKECNDTFSLSSTCFCKRNECIKDLEDPWHEESVSETENALGAASKPKIKVADYIKHSVENKTTKHWRNDRSAKGTNRPEIIYNLRKRKSDLIL 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02226 505 Gene3D Cupin 24 68 - -
Spst2g02226 505 Gene3D Cupin 104 266 - -
Spst2g02226 505 ProSiteProfiles JmjN domain profile. 36 77 IPR003349 -
Spst2g02226 505 PANTHER LYSINE-SPECIFIC DEMETHYLASE 28 65 - -
Spst2g02226 505 Pfam JmjC domain, hydroxylase 108 203 IPR003347 -
Spst2g02226 505 ProSiteProfiles JmjC domain profile. 1 220 IPR003347 -
Spst2g02226 505 Pfam jmjN domain 37 65 IPR003349 -
Spst2g02226 505 SMART JmjN_1 35 71 IPR003349 -
Spst2g02226 505 SMART cupin_9 42 220 IPR003347 -
Spst2g02226 505 SUPERFAMILY Clavaminate synthase-like 111 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02226 Spst-Chr2 21396391 21399816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02226 105 249 C2H2 Transcription Factor Family AT5G04240 37.931 1.76e-25 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Spst2g02226 JmjC 7.9e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02226 - - gmx:100809650 489.96