Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02201 ATGTTGCGGCTGGACCTGAACCGCGTGCCACCGACAGAAGAGAATGTTCGACCTGCCCATGTTGTTGTCGATCCAAATGACGATGATGATGATGATGTCGTTGAACTCTCACCAAGAACATTTGCTCAGCATCGAACATTTATAGGAGTTCAAATTGATTTGCTTTTACAGGGTGAAAATAAGGCACCTGAACCTCCCAAGAAGCCTGAATTTGATTGTCCAATATGCATGAGTCCTTTTGTAGAGCCTGTGTCCACAAGGTGTGGTCATATTTTTTGCAGGGAATGCATCAACACTGCAATAACTACCCAGGGTAAATGCCCTTCCTGCAGAAAGAAGGTTACAAGGAACCAACCCATCAGGATTCATGAATTAGTTTGCCCTAACTGGTTGGTGTTTTGTGATTCAACAGGAGATCTCTGTCCAGGGCTTATGGAGGAGAATGATGAATGCAAGATTGATAATGGGCATATTAGAAGCAACCCATGTGGGTTCTCTACTTTTTTTACACTAAAGAATTGGAACGTGAAGGTTCATCCTGACGCTGAGGCCAAACAACAGTCACCACGTTTCACGCGTTTATTGGTTTAA 591 0.4365 MLRLDLNRVPPTEENVRPAHVVVDPNDDDDDDVVELSPRTFAQHRTFIGVQIDLLLQGENKAPEPPKKPEFDCPICMSPFVEPVSTRCGHIFCRECINTAITTQGKCPSCRKKVTRNQPIRIHELVCPNWLVFCDSTGDLCPGLMEENDECKIDNGHIRSNPCGFSTFFTLKNWNVKVHPDAEAKQQSPRFTRLLV 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02201 196 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Spst2g02201 196 SMART Ubox_2 70 130 IPR003613 GO:0004842|GO:0016567
Spst2g02201 196 SUPERFAMILY RING/U-box 68 125 - -
Spst2g02201 196 ProSiteProfiles Zinc finger RING-type profile. 73 111 IPR001841 -
Spst2g02201 196 PANTHER ELFLESS, ISOFORM B 62 122 - -
Spst2g02201 196 SMART ring_2 73 110 IPR001841 -
Spst2g02201 196 Pfam Zinc finger, C3HC4 type (RING finger) 73 110 - -
Spst2g02201 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 131 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02201 Spst-Chr2 21130223 21141229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02201 28 122 C3H Transcription Factor Family AT3G07200 40.000 5.26e-22 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02201 K22651 - gmx:100778432 102.064