Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02189 ATGAACTCTCTCTTTTCGCCTGAAAACCTTCCTCCACCACCGGGATTCCCTATCCCCGCCTCAATTGCCGCCGCCACAACCACCACCAGCATCTCCCCAATCCCAACACTAATCCCAAAGCTCGAACCTTTCGACGAATGGCTCAACACCGACACTTCCCACCAACAACATCAAGAACAACAATATCAGGATCCCAATATTTCTAATGGGTCCCTGGATCTCGACCTCGATCTCGACCTCGACCTCAATCTCTTATGCGACAGAACCTCGGACGAGCCAACCAACAACTTGTTCTCCGAGTTCAACAGAATCTCCCAGCTTTTCTGCACGGCTTTCTCCACCGACGATCCCCAGAACGAGGCCGTTCCTGACCCCATCACCGAAGGCTTGCAACAGCTCCGAAACGACGCCGTTTCCGACCCTTTCGCTGAAAACCCGCAGCGCTTCCAGAACGGCGCCATTTCTGACCCCGGGCTGCAGCAGAGCCCAAACGACACCGTTTCAGATCCGGATTCGCGGGCAATTGTGCCTGTCCCGGATTCAACGATGGCGGCAACCACGCCGCGGCGGCGGTGTAAGGAGCTGGTTCGGGTTGCGGATCTTGGTCTGCCAGAGCAGAGGCACTTCCGGGACGTTGTCCGGCGGACTAGAATGATGTACGACTCGCTGCGCGTGCTGGCGACGGTGGAAGATGAGCGCCGGGTGGACTCCCGCCGGGGGCGCAGCGATTTGCGCGCGTCGGCCGTGATGAGGAACTGTGGTTTGTGGTTGAATCGTGACAAGAGAATTGTTGGTTCAATTCCTGGTGTTTGCATTGGTGACGTGTTTCTTTATAGGATGGAGTTGTGTGTGGTTGGGTTGCATGGTCAACCTCAGGCTGGCATTGATTATCTCCCAGCTAGCCTGAGCTCTAATGGTGAACCAATTGCCACTAGTGTCATTGTCTCTGGTGGTTATGAGGATGATGTTGATGAGGGTGATGTTATCACTTACACTGGCCATGGTGGCCAGGACAAGAATTCTAGGCAGGTTTTTCACCAGAAGCTTGAGGGAGGGAACCTTGCAATGGAGAGGAGTAAGCACTATGGGATAGAGGTGAGGGTCATTCGCGGAGTGCGGTATGAGGGCGCTGCCTCTGCTACTGGGAAGTTGTATGTGTATGATGGGTTGTATAGGATTATTGATTCCTGGTTTGATGTTGGGAGGTCGGGTTTCGGTGTTTTTAAGTATAAGCTTTGTAGGATTGATGGGCAAGCTAAGATGGGGAGCATGCTGATGAAGGAGGCGCTTATGCTTAAGAAGGATCCCTTGAGTTTGAAACCCATGTGTTGTATATCGCTTGATATTTCGAATAGGAACGAGAATGTGGCAGTTAGGCTTTTCAATGACATTGATCGTAATTACGACCCTCTCCGATATGAGTACCTCGTGAAGACAAATTTTCCTCAGTTTGTGTTTCACCAGAGTGGGAGAGGTACTGGTTGCGATTGTGTGGACGGGTGTGTTGAAGGGTGCTTTTGTGCTATGAAGAACGGAGGGGAGTTTCCTTATAATCAGAGTGGGATTCTCTTGAGAGGGAAGCCTTTGGTTTTTGAGTGTGGCCCATTTTGTAGTTGTCCGCCTCATTGTCGGAATCGAGTCACACAGAAGGGGCTGAAAAATAGGTTGGAGGTGTTTAGATCTAGAGAAACTGGTTGGGGAGTTAGGTCGTTGGACCTTATTCAAGCCGGCGCTTTTATATGCGAGTACACGGGGGTTGTGCTGACAAGGGAGCAAGCAGAACTTTTGACAATGAATGGTGATTCTCTGATATATCCTAACCGCTTTACTGATAGGTGGTCGGAATGGGGGGACTTATCTACAATAGACTCCAAATATGTGCGTCCATCTTATCCCTCTATCCCTCCTTTGGATTTTGCTATGGATGTGTCAAGAATGAGGAATGTTGCTTGCTATATGAGTCATAGTTCCACTCCCAATGTATTGGTTCAGTTTGTCCTGTATGATCACAATAATTTGATGTTCCCTCGCCTTATGCTATTTGCTATGGAGAACATCCCTCCGATGAGAGAGCTCAGCCTTGATTATGGGGTAGCCGACGAGTGGACCGGGAAGCTCTCTATATGTAACTGA 2133 0.5026 MNSLFSPENLPPPPGFPIPASIAAATTTTSISPIPTLIPKLEPFDEWLNTDTSHQQHQEQQYQDPNISNGSLDLDLDLDLDLNLLCDRTSDEPTNNLFSEFNRISQLFCTAFSTDDPQNEAVPDPITEGLQQLRNDAVSDPFAENPQRFQNGAISDPGLQQSPNDTVSDPDSRAIVPVPDSTMAATTPRRRCKELVRVADLGLPEQRHFRDVVRRTRMMYDSLRVLATVEDERRVDSRRGRSDLRASAVMRNCGLWLNRDKRIVGSIPGVCIGDVFLYRMELCVVGLHGQPQAGIDYLPASLSSNGEPIATSVIVSGGYEDDVDEGDVITYTGHGGQDKNSRQVFHQKLEGGNLAMERSKHYGIEVRVIRGVRYEGAASATGKLYVYDGLYRIIDSWFDVGRSGFGVFKYKLCRIDGQAKMGSMLMKEALMLKKDPLSLKPMCCISLDISNRNENVAVRLFNDIDRNYDPLRYEYLVKTNFPQFVFHQSGRGTGCDCVDGCVEGCFCAMKNGGEFPYNQSGILLRGKPLVFECGPFCSCPPHCRNRVTQKGLKNRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQAELLTMNGDSLIYPNRFTDRWSEWGDLSTIDSKYVRPSYPSIPPLDFAMDVSRMRNVACYMSHSSTPNVLVQFVLYDHNNLMFPRLMLFAMENIPPMRELSLDYGVADEWTGKLSICN 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02189 710 ProSiteProfiles Pre-SET domain profile. 493 551 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst2g02189 710 MobiDBLite consensus disorder prediction 144 169 - -
Spst2g02189 710 SMART preset_2 446 538 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst2g02189 710 Gene3D SET domain 423 710 IPR046341 -
Spst2g02189 710 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 113 710 IPR025794 GO:0016571
Spst2g02189 710 SUPERFAMILY SET domain 439 709 IPR046341 -
Spst2g02189 710 Pfam Pre-SET motif 449 546 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst2g02189 710 SMART G9a_1 260 418 IPR003105 -
Spst2g02189 710 MobiDBLite consensus disorder prediction 141 177 - -
Spst2g02189 710 Pfam SET domain 565 697 IPR001214 GO:0005515
Spst2g02189 710 SMART set_7 554 703 IPR001214 GO:0005515
Spst2g02189 710 SUPERFAMILY PUA domain-like 246 427 IPR015947 -
Spst2g02189 710 ProSiteProfiles SET domain profile. 554 697 IPR001214 GO:0005515
Spst2g02189 710 Gene3D - 262 422 IPR036987 -
Spst2g02189 710 ProSiteProfiles YDG domain profile. 265 414 IPR003105 -
Spst2g02189 710 Pfam SAD/SRA domain 264 418 IPR003105 -
Spst2g02189 710 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 161 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02189 Spst-Chr2 20933363 20935495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02189 210 699 Su(var)3-9 homologs AT5G04940 38.833 7.45e-102 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst2g02189 SAD_SRA 4.6e-46 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02189 K11420 - gmx:100795514 1162.52