Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02184 ATGAAGCCCGAGTTGTACGAAATCTCCGACGATGAATGGGAGAACCACTCCTTCAAACCCTCCCGCGTCCTTAAACGACCTCGCACTTCGTCTCCTCCATCTCCGCCACCCATCGAATCCTTCGCCTACACCTCTAAGGTCGACGTTTCAAGCGAAAACGACAGCGATTGCGTCGAAATCGCGCCGAACGACGCCAATTTCCTCGAAGACCTCGAGGACGCCGACGTTGGCGACTCCGCCGCTGGCTACGCGGTGGCCTCGCGCGGCAGGAGGTTCATCATCGATGACGACGACGAAGACGCCGAGGAAAACGGCGGAAGAGACAGACGCGTGGCGGAATTGTACCAGGTGGCGTCGAGCGAGGTGGAAGAAGAAGGTGAAGAGTTGAACGAAAACGATGTCGTTGGTAGGGCTTTGCATAAGTGCGCGCGAATCGCGGCGGAGTTGAAGGGCGAACTTTACGGCTCGTCCGGGACCGCGTGCGAGAGGTATTCGGAAGTGGAGTCTTCGTCAGTGAGGATCGTGACTCAGGAGGATGTGGATGATGCGTGCGCGTCTGAGGATTCGGATTTTCAACCATTGCTTAAGCCGTATCAGTTGGTTGGTGTGAACTTTTTGCTTCTACTGTATCGGAAGGGGATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGCAAAACAGTTCAGGCCATCACGTATTTAACTTTGTTGAAACGCTTGCACAATGATTCTGGTCCACATCTTATTGTATGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTTAAAAGGTGGTGTCCGTCCGTTTCTGTTCTTCAATATCATGGGGCTCGACGTGCAGCATACTGCAAGGAGTTGAACTCCCTGTCCAAGGCTGGATTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTGCACAGCAGAAGGATGATCGCAAAATCCTGAAGCGGTGGAGATGGAGCTGTGTGTTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCACGAAATGCAAACCAACGGTTGATGTTGACAGGGACACCACTTCAGAATGATCTGCATGAGTTATGGTCGTTGTTGGAGTTTATGATGCCTGATATTTTTGCTTCGGAAGATGTTGACCTAAAAAAGTTACTAAATGCAGAAGATAGAGATTTAATTGGTCGTATGAAGTCCATCTTAGGGCCATTTATTTTGCGGCGACTGAAATCTGATGTTATGCAACAACTTGTTCCAAAAATACAGCAGGTTGAATATGTAATAATGGAAAGGCAGCAGGAGTCTGCTTACAAGGAAGCCATTGAAGAGTATCGTGCTGTTTCACAAGCTCGGATGGCAAAATGTTCTGACCTTAATTCAAAAAGTGTTCTTGAAGTTCTCCCTCGGCGACAGATAAATAACTACTTTGTTCAGTTTCGCAAGATTGCAAATCATCCCTTGTTAATAAGGCGAATCTACAATGACGATGATGTCATTCGCTTTGCTAGGAAGCTACATCCGATAGGTGCTTTTGGTTTTGAATGTACTTTGGACAGAGTTATAGAGGAACTTAAAAATTACAATGACTTCTCTATTCACCGGGTGGAGGATGGTCAGTGTCACATGGTGGTTGATGCTGGCAAGCTTTTACTTCATTATGGTGTCAATGATAGAAAGGGGGTCCTTCCGGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGCAGAACTTCTTCCTTCACTAAAGAAGGATGGTCATCGAGCCTTGATCTTTAGTCAATGGACCTCAATGCTTGACATATTAGAGTGGACATTGGATGTCATTGGATTAACCTATAGACGGCTTGATGGAAGTACACAGGTAGCGGAGAGGCAAACAATAGTTGATACGTTCAATAATGATACTTCAATATTTGCATGCTTACTTTCTACGAGAGCTGGTGGACAGGGCTTAAACCTAACAGGAGCTGATACAGTTGTAATTCACGACATGGATTTTAACCCACAGATTGATAGGCAAGCTGAAGATCGTTGCCATAGAATCGGTCAAACAAAGCCTGTAACCATATATCGGCTGGTAACCAAGGGAACAGTTGACGAAAATGTGTATGAGATTGCAAAAAGAAAGCTAGTATTAGATGCTGCCGTTCTCGAGTCCATGGAGGAGATTAATGAAGGTGACATGCCCGAGAAGACCATGGGAGAGATATTCAATATTGGTAATGACTCAAGATCGTTCCCTACTTACAGGAATTATGTTAAGTGGATCTACGACGGTAAAGTGCAGTACCCTCCTCATAAATCTGCCAAGAATTTCCGAGGCCCCTTTTTCCATAAGCATAATTGCATTAAACATGAATCCCGTATTACGAAGGTAGGTGATGAAGTGTATAGGCAAGTAGCTAGGTTATCTAGTGAAGGACTCAATTTCGAATTAAGATTTGGTTGGAGATTTGCTCCCAACTTTGGAAAACAACATGGCTTCTGCTTCCTCATCCACACCCTTCTTGGGAATCAGACAAGAAAATCAAAGTCAGGTTACACAACAGCACCAATCCTCCACAGCTGCTTCCTCCACTACTACTTCTACTACTCCAACCACACTGCCTCAAAAGAAGAGAAGGAATCAACCAGGAACACCATGCAAGTAGCTCTATGCATTCTTCATTAA 2715 0.4538 MKPELYEISDDEWENHSFKPSRVLKRPRTSSPPSPPPIESFAYTSKVDVSSENDSDCVEIAPNDANFLEDLEDADVGDSAAGYAVASRGRRFIIDDDDEDAEENGGRDRRVAELYQVASSEVEEEGEELNENDVVGRALHKCARIAAELKGELYGSSGTACERYSEVESSSVRIVTQEDVDDACASEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKRLHNDSGPHLIVCPASVLENWERELKRWCPSVSVLQYHGARRAAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVIMERQQESAYKEAIEEYRAVSQARMAKCSDLNSKSVLEVLPRRQINNYFVQFRKIANHPLLIRRIYNDDDVIRFARKLHPIGAFGFECTLDRVIEELKNYNDFSIHRVEDGQCHMVVDAGKLLLHYGVNDRKGVLPDKHVMLSAKCRALAELLPSLKKDGHRALIFSQWTSMLDILEWTLDVIGLTYRRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESMEEINEGDMPEKTMGEIFNIGNDSRSFPTYRNYVKWIYDGKVQYPPHKSAKNFRGPFFHKHNCIKHESRITKVGDEVYRQVARLSSEGLNFELRFGWRFAPNFGKQHGFCFLIHTLLGNQTRKSKSGYTTAPILHSCFLHYYFYYSNHTASKEEKESTRNTMQVALCILH 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02184 904 PANTHER SNF2/RAD54 HELICASE FAMILY 102 739 - -
Spst2g02184 904 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 754 IPR027417 -
Spst2g02184 904 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 208 386 IPR014001 -
Spst2g02184 904 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 588 755 IPR001650 -
Spst2g02184 904 SMART helicmild6 614 697 IPR001650 -
Spst2g02184 904 Gene3D - 431 506 IPR027417 -
Spst2g02184 904 FunFam Protein CHROMATIN REMODELING 19 isoform A 166 444 - -
Spst2g02184 904 CDD SF2_C_SNF 575 708 - -
Spst2g02184 904 SMART ultradead3 191 396 IPR014001 -
Spst2g02184 904 Gene3D - 561 763 IPR027417 -
Spst2g02184 904 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 421 IPR027417 -
Spst2g02184 904 Pfam SNF2-related domain 215 501 IPR000330 GO:0005524|GO:0140658
Spst2g02184 904 CDD DEXHc_Snf 195 388 - -
Spst2g02184 904 Pfam Helicase conserved C-terminal domain 585 697 IPR001650 -
Spst2g02184 904 Gene3D - 195 430 IPR038718 -
Spst2g02184 904 MobiDBLite consensus disorder prediction 17 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02184 Spst-Chr2 20862117 20880870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02184 216 736 RAD5 or RAD16-like Gene Family AT5G22750 26.972 2.36e-49 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst2g02184 SNF2_N 1.2e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02184 K14439 - gmx:100806323 1295.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02184 2 20862117 20880870 Spst2g02184 2 20862117 20880870 ECH