Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02181 ATGGCAACAAACAGGTTTATATGTGAAGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACCTGCCATGGAAGCTAAAGCAGAAGACTAATAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTTCACCATGATCCTTCAAGGGCTCTTGGAGACCTCACTGGTATCAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGATTGGAAAGCACACTCCAAAACCTGTGGCACCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCAAGACGGGACAGCTTCATCACTCACAGAGCCTTTTGTGATGCATTGGCACAAGAAAGTGCAAGAGAGCCACCCAACTTGAGCAATGCCATTGGCAACCAACTTTATGGAAACAGTAGCAACATGTCCTTAGGCTTATCTCAGAATATGGGTTCTCAGATCCCTTCAATCCATGACCAAAATTCCCAATCTAGTGAACTATTGCGTTTTGGGGGTGCACCAAGGACTGGTCAATTTGATCACATTCTCCCACCAAACATTGCCTCACCCTTCAGACCCTCCTCGCACCAAACCATGCAAATGCAAACCCCTCCGTTCTTCATGCCAGAATCAAACCAAAACCAGAACTACCATGATCATCAACAAGGGTTAATCTCAAACAAGCCATTCCAAGGACTGATACAATTATCTGACCTCAACAACAGCAACCCTTCTGGCTCCAACCTCTTCAACCTTCCCTTTCTATCCAACCGAGGCCACACCACCACCAACAACTATTCTGATGAACAGCACTTTAACACCAATGAAGGGTCAAACTTCTTCTCAGAAGGTACCATAATTGGCACTGATCACCAAGCAAGCTCCGCCGCTGCCCCTTCTCTCTTCAGCACCTCTCTTCAAAACAGCACCAACATGTCTCACATGTCAGCTACTGCACTGCTCCAAAAAGCAGCTCAAATGGGTGCTGCAAGTTCCAGCAACAACAACAACACAAGCGCCTCCTCTATTCTCAGAAGCTTGGCATCCAAATCTGATCACAGGCCACTGATCAGTCCTGCAAACTACAGCAGCATCTTGAACTCCAGCGTGCAAGAGATGATGAACCTTCCCGGGTTCGAAGCATATGATCATGGCATGAACAAGGAACCAAAACTCAGCGTTGGAGCCTCTGATAGGCTCACAAGGGATTTTCTAGGAGTTGCACAGCAACAACAACAACAACGAGGGTTTAACTTGAGTTCTTTGGAAGCAGAGACAAATAATGCTGCGCCGCCAAGTCAATCTTTCGGAGGTGGAGGAAACTTTCAGTGA 1383 0.4664 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESAREPPNLSNAIGNQLYGNSSNMSLGLSQNMGSQIPSIHDQNSQSSELLRFGGAPRTGQFDHILPPNIASPFRPSSHQTMQMQTPPFFMPESNQNQNYHDHQQGLISNKPFQGLIQLSDLNNSNPSGSNLFNLPFLSNRGHTTTNNYSDEQHFNTNEGSNFFSEGTIIGTDHQASSAAAPSLFSTSLQNSTNMSHMSATALLQKAAQMGAASSSNNNNTSASSILRSLASKSDHRPLISPANYSSILNSSVQEMMNLPGFEAYDHGMNKEPKLSVGASDRLTRDFLGVAQQQQQQRGFNLSSLEAETNNAAPPSQSFGGGGNFQ 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02181 460 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Spst2g02181 460 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Spst2g02181 460 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Spst2g02181 460 FunFam Zinc finger protein MAGPIE 2 29 - -
Spst2g02181 460 MobiDBLite consensus disorder prediction 441 460 - -
Spst2g02181 460 SMART c2h2final6 6 28 IPR013087 -
Spst2g02181 460 SMART c2h2final6 82 102 IPR013087 -
Spst2g02181 460 SMART c2h2final6 47 77 IPR013087 -
Spst2g02181 460 Gene3D Classic Zinc Finger 6 50 - -
Spst2g02181 460 Gene3D Classic Zinc Finger 60 139 - -
Spst2g02181 460 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Spst2g02181 460 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 433 IPR031140 -
Spst2g02181 460 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02181 Spst-Chr2 20845141 20849250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02181 1 433 IDZ Gene Family AT2G02070 47.942 5.46e-112 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst2g02181 zf-C2H2_jaz 2.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02181 K25870 - gmx:100807789 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02181 2 20845141 20849250 Spst2g02181 2 20845141 20849250 ECH