Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02176 ATGGAAAAGGTGGCTGCGCCTCCGATTCTGATGCAGCGGAAGCGCGATCTGTCGTACGGCGTCGTTGCGGGGACTCCCAGCGAGACCTGGAAGTGGGAGTGGGACAGCGTGCGTTTCGCTGGGAAGCCTCCAAGCGATGACGTCGTTTTCGAGGAGGAGATCGTCGCGGCGGTCGCTCCTCTGCAGCTCAACCTCGCCGGGAGGGTGAACGGCGGCGGTAACAAGAGAGTGCGCTCTGGGTCGCCCGGCACGGCGTCGTATCCGATGTGTCAGGTTGATAACTGCAGGGAGGATCTGTCGAAGGCGAAGGACTATCACCGGAGGCACAAAGTGTGCGAGGCTCATAGCAAAGCCTCCAAGGCGCTTCTCGCCAACCAAATGCAAAGGTTTTGTCAGCAGTGTAGTAGGTTTCACCCGCTGTCCGAGTTTGACGAGGGGAAACGAAGCTGCCGCCGGAGACTCGCCGGGCACAACCGCCGCCGTAGGAAAACGCAGCCGGAGGATGTCACTTCCGCCACTCCGGCCCCCGCCGCCGCCGCCGCGAATTTGGAAATCTTCAACTTGTTGACTGCAATAGCCGGAGCTTCGCAGGGAAAATTTGAAGAAAGAAGATCACAAGTTCCAGATAGAGAGCAGCTTGTTCAGATTCTCAATAGGATACCTTTGCCTGCGGATCTTGCGACCAAGTTGCTCGATGCTGGTAATGTCAATGGGAAAAAAGATCATGTACAATCGCAGACACCAACCTCCTATCACCATCATGACCAACTGAACCAGACTCCGGCTGCCCCATTAACTATGGACTTGCTTGCTGTTCTTTCGACCACTCTGTCTGGATCTGGCCCTGACTCCAATGCGTCACCTTCTCAAAATCGAAGCTGCAGTAGTGATGGTGGCAGTGTCAAGTTCAGGAGTATTGCTGATCAAACAAGACAGCAGCACTTATTTTCAGTTGGCGGAGAAAGAAGCAGTACCAGTTCCCAGTCTCCAATTGAAGATTCAGATTGCCAGGAGGATGTTCGAGTCAATTTACCGCTGCAACTTTTTAGCTCCTCCCCGGAAGATTACAGCTTGCCTAAGCTAGCATCTTCGAGAAAGTATTTCTCGTCTGACAGTAGTAACCCTGCTGAAGAGAGGTCACCATCGTCTTCTCCTCCAGTGGTGGAGATGCAATTTGATTTGCAGGGTGGTCCTAGAGGTCTCAAGCCAGAGAGCATATCCACTGGAAGAGGAGTTAATTCAAACAAGGAAGCTAGCCAAAGTCATAGTTGTAATATCTCTCTTGATCTATTTAAAGGGTCAAATAACAGGATGCAACAACCTAGTTGCCTTCAAAGTGTTCCATTTCAAGCTGGTTATACATCTTCGGGCTCTGATCATTCACCTCCCAGTTTGAATTCAGACGCCCAGGATCGCACTGGGAGAATAATGTTTAAACTATTTGACAAGCATCCCAGCCACTTCCCAGGAACATTGCGAGCACAGATTTACAATTGGCTTTCTAATAGGCCATCAGACATGGAGAGCTACATACGGCCTGGTTGTGTGGTCCTATCACTTTATGCTTCAATGTCTTCTGCTGCCTGGGAGAAACTAGAGGAAAACTTTCTCCAACATGTTCACTCTTTAATTCAAAATTCAGATTCTGACTTTTGGAGAAATGGAAGGTTTCTGGTACATTCTGGCAGTCAGTTAGCTTCACACAAAGATGGGAAGATACGCATGTGCAAACCGTGGAGGACATGGAAGTCACCAGAGTTGATATCTGTTTCCCCTTTGGCAATTGTTAGTGGACAGGAAACCTCGATTTCATTGAAGGGTAGAAACTTGTCAACTCCTGGCACAAAGATTCACTGTACAGGTACTGGCTCTTACACATCAGCAGAAGTCATCGGATCTGCGTATCCTGGTGTGATCTATGATAAGATAAAGTTGAGTGGTTTTAAAGTTCAGGATGTATCTCCCGGTGTTGTGGGGCGCATTTTTATTGAGATTGAAAATGGTTTCAAGGGTAACAGTTTTCCGGTGATAATAGCTGATGAGACCATTTGCAAGGAATTGAGACCACTTGAGTCTGAATTTGACGAGGAGAAAAAAATATGTGATGCCATTTCGGAGGACCATGAACATAATTTTGGAAGGCCGAGATCAAGGGAGGAGACTTTGCACTTTTTGAATGAGCTTGGCTGGCTGTTTCAAAGAGAAAGATTCTCATATGTGCATGAGGTTCCATATTATTCACTTGACAGGTTCAAATTTGTACTCACATTTGCTGTGGAAAGAAACTGTTGCATGTTAGTCAAAACCCTTCTGGATGTGCTGGTTAATAAACACTTGCAAGGGGAATGGTTGTCAACAGGGTCAGTGGATATGTTGAATGCAATCCAACTCTTAAATAGAGCAGTAAAAAGAAAGTACGTAGACATGGTTGATTTGCTGATCCACTATTCTTTACCGAACAAAAATAGTACATCCAAGAAATATGTATTTCCTCCAAATCTTGAGGGTCCTGCTGGTATTACACCATTGCACTTGGCAGCATGCACATCTGGTTCTGAGAGTGTGGTTGACTCTTTAACAAGTGACCCACAGGAGATTGGTTTGAAGTGCTGGGAATCCCTCATGGATGCTAATGGGCAAACTCCACATGCCTATGCCATGATGAGGAATAATAACTCTTATAATGTGCTGGTTGCCCAGAAACTTGCTGATAGACGAAGGGGTGAAATTTCAGTAACAATTGAGAATGAGATAGAACAACCGTCACTGAGGGTGGAGCTTAAGCAAAAGCAAAGTTACCTACTCAAACGAAGTCAGAGTTCTTGTGCCAAGTGTGTGGCTGCAGAAATTCACTACAACAGAAGAGTTCCAGGTTCACAGGGCTTGCTTCACCGCCCCTTTATTTATTCAATGCTAGCCGTTGCTGCAGTTTGTGTATGTGTTTGTGTGTTCTTCCGAGGACGCCCTTTCGTAGGCTCAGTTGCTCCCTTCAGTTGGGAAAATCTTGATTATGGCACAATCTAA 3024 0.4699 MEKVAAPPILMQRKRDLSYGVVAGTPSETWKWEWDSVRFAGKPPSDDVVFEEEIVAAVAPLQLNLAGRVNGGGNKRVRSGSPGTASYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSATPAPAAAAANLEIFNLLTAIAGASQGKFEERRSQVPDREQLVQILNRIPLPADLATKLLDAGNVNGKKDHVQSQTPTSYHHHDQLNQTPAAPLTMDLLAVLSTTLSGSGPDSNASPSQNRSCSSDGGSVKFRSIADQTRQQHLFSVGGERSSTSSQSPIEDSDCQEDVRVNLPLQLFSSSPEDYSLPKLASSRKYFSSDSSNPAEERSPSSSPPVVEMQFDLQGGPRGLKPESISTGRGVNSNKEASQSHSCNISLDLFKGSNNRMQQPSCLQSVPFQAGYTSSGSDHSPPSLNSDAQDRTGRIMFKLFDKHPSHFPGTLRAQIYNWLSNRPSDMESYIRPGCVVLSLYASMSSAAWEKLEENFLQHVHSLIQNSDSDFWRNGRFLVHSGSQLASHKDGKIRMCKPWRTWKSPELISVSPLAIVSGQETSISLKGRNLSTPGTKIHCTGTGSYTSAEVIGSAYPGVIYDKIKLSGFKVQDVSPGVVGRIFIEIENGFKGNSFPVIIADETICKELRPLESEFDEEKKICDAISEDHEHNFGRPRSREETLHFLNELGWLFQRERFSYVHEVPYYSLDRFKFVLTFAVERNCCMLVKTLLDVLVNKHLQGEWLSTGSVDMLNAIQLLNRAVKRKYVDMVDLLIHYSLPNKNSTSKKYVFPPNLEGPAGITPLHLAACTSGSESVVDSLTSDPQEIGLKCWESLMDANGQTPHAYAMMRNNNSYNVLVAQKLADRRRGEISVTIENEIEQPSLRVELKQKQSYLLKRSQSSCAKCVAAEIHYNRRVPGSQGLLHRPFIYSMLAVAAVCVCVCVFFRGRPFVGSVAPFSWENLDYGTI 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02176 1007 Gene3D - 80 151 IPR036893 GO:0003677|GO:0005634
Spst2g02176 1007 ProSiteProfiles Zinc finger SBP-type profile. 87 164 IPR004333 GO:0003677
Spst2g02176 1007 MobiDBLite consensus disorder prediction 316 333 - -
Spst2g02176 1007 MobiDBLite consensus disorder prediction 276 301 - -
Spst2g02176 1007 MobiDBLite consensus disorder prediction 449 469 - -
Spst2g02176 1007 MobiDBLite consensus disorder prediction 366 389 - -
Spst2g02176 1007 SUPERFAMILY SBT domain 88 168 IPR036893 GO:0003677|GO:0005634
Spst2g02176 1007 SUPERFAMILY Ankyrin repeat 754 900 IPR036770 -
Spst2g02176 1007 MobiDBLite consensus disorder prediction 239 257 - -
Spst2g02176 1007 MobiDBLite consensus disorder prediction 153 175 - -
Spst2g02176 1007 MobiDBLite consensus disorder prediction 366 420 - -
Spst2g02176 1007 Pfam SBP domain 90 163 IPR004333 GO:0003677
Spst2g02176 1007 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 72 796 IPR044817 GO:0003677
Spst2g02176 1007 MobiDBLite consensus disorder prediction 316 336 - -
Spst2g02176 1007 Gene3D - 751 940 IPR036770 -
Spst2g02176 1007 MobiDBLite consensus disorder prediction 237 257 - -
Spst2g02176 1007 FunFam Squamosa promoter-binding-like protein 14 81 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02176 Spst-Chr2 20790542 20795422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02176 3 1007 SBP-box Gene Family AT1G20980 52.980 0.0 952
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Spst2g02176 SBP 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02176 - - gmx:100819004 1721.83