Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02147 ATGGTTCGTCCTTGTTTCCACAAGCTGGTTCTCCCCATCATTCTTCAGTCCAGACAACTGAGGATTCCAGATAATTTCCTGAGGAAATATGGGACCCAGCTTTCTACAATTGCTACCCTCACTGTTCCTGATGGTAGTGTTTGGCGTATAGGATTGAAGAAAGCGGACAGCAGAATTTGGTTTGTTGATGGTTGGCAAGATTTTATTCAACGATACTCCATTACTGTTGGATACTTTTTGGTGTTCATGTATGAAGGGAATTCGTCCTTCATTGTTCATATTTTTAATTTGAGTACCTCTGAGATAAATTATCAATCAGCAATGAGAAACCATAATGAAGGGCCCTGCTTTGCAAATTACCATCATATTTTTGATGAAATGGAAGATGTAGACTCCCTTGATTTGTCATCTCCCTACCTTACATCCGGTACCTTGCAAAACAAGGGTTTTGCTGGATCTTTAGATCCACTGGCATCAGGAAAGAGTCATACTCCAGCTTTGCAGAATTTGTTCAATGGTGGATCAAAACTCAATCGGGTAAACTGGGGCGACAGCGGGAGTGCTTATTCTTCGAAAGGTGCTAATTCACAGGGCAGTCAGTCAACCAGAGACATAGGTGTTCAGTTTAACGCTGTTGAGTTTAAAAGGTCCACTGAAGAATTGAAATTGCGTTATTCTAATGAGGAAGCAGTTAATAAAACTGCAAAAAAGAAGCGGAAATCAGATCTCCAGGGCGAGGAACCCTCTGGTGAAAATGAAGAAGAGGCAGAAATGCGCTATAGGTTTTATGAAAGTGCATCTGCAAGGAAAAGAACAGTGACAGCAGAAGAAAGAGAAAGGGCGATTAATGCATCAAAAGCATTTGAACCGACTAATCCTTTCTGCCGAGTCGTCCTGCGACCTTCCTATTTATATAGAGGATGCATAATGTATTTGCCTTCGTGCTTTGCAGAGAAGAACCTGAATGGGGTGTCAGGATTCATTAAACTTCAACTCCCCAATGGCAGACAGTGGTCCGTTCGCTGTCTTTACAGGGGAGGTCGAGCTAAGTTAAGCCAAGGATGGTTTGAATTCACAGTGGAGAACAATTTGGGGGAAGGTGATGTCTGTGTGTTTGAGCTCCTTAGAACGAAGGAAGTTGTGCTGCAAGTTGCTGTGTTTCGTGTAACTGAGGATGCAGGGTTGTTGAACTCTCCTCCTCCTGTGCAGCAGCACAGCCCAAATATGAGCCACACCAAACTCTTAAACCCTCATTTGCAGCATCGTCTCAGTACAACCAAATTGATTAGAAATTAG 1296 0.4282 MVRPCFHKLVLPIILQSRQLRIPDNFLRKYGTQLSTIATLTVPDGSVWRIGLKKADSRIWFVDGWQDFIQRYSITVGYFLVFMYEGNSSFIVHIFNLSTSEINYQSAMRNHNEGPCFANYHHIFDEMEDVDSLDLSSPYLTSGTLQNKGFAGSLDPLASGKSHTPALQNLFNGGSKLNRVNWGDSGSAYSSKGANSQGSQSTRDIGVQFNAVEFKRSTEELKLRYSNEEAVNKTAKKKRKSDLQGEEPSGENEEEAEMRYRFYESASARKRTVTAEERERAINASKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQLPNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRTKEVVLQVAVFRVTEDAGLLNSPPPVQQHSPNMSHTKLLNPHLQHRLSTTKLIRN 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02147 431 SUPERFAMILY DNA-binding pseudobarrel domain 4 97 IPR015300 -
Spst2g02147 431 CDD B3_DNA 293 388 IPR003340 GO:0003677
Spst2g02147 431 Gene3D - 272 392 IPR015300 -
Spst2g02147 431 SUPERFAMILY DNA-binding pseudobarrel domain 288 389 IPR015300 -
Spst2g02147 431 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Spst2g02147 431 SMART B3_2 6 98 IPR003340 GO:0003677
Spst2g02147 431 SMART B3_2 295 390 IPR003340 GO:0003677
Spst2g02147 431 Pfam B3 DNA binding domain 298 388 IPR003340 GO:0003677
Spst2g02147 431 Pfam B3 DNA binding domain 15 96 IPR003340 GO:0003677
Spst2g02147 431 Gene3D - 1 99 IPR015300 -
Spst2g02147 431 MobiDBLite consensus disorder prediction 230 257 - -
Spst2g02147 431 MobiDBLite consensus disorder prediction 230 247 - -
Spst2g02147 431 CDD B3_DNA 4 96 IPR003340 GO:0003677
Spst2g02147 431 PANTHER B3 DOMAIN-CONTAINING 4 382 - -
Spst2g02147 431 ProSiteProfiles B3 DNA-binding domain profile. 295 390 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02147 Spst-Chr2 20447618 20452846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02147 1 394 B3 DNA Binding Superfamily AT3G18990 49.020 1.44e-125 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst2g02147 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02147 - - gmx:100789352 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02147 2 20447618 20452846 Spst2g02147 2 20447618 20452846 ECH