Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02117 ATGACTGTGGATGAAGTGGATAGTAGCTCCGAGTGGAGCAGAGAACAGGATAAAGCATTTGAAAATGCATTGGCAACTCACCCCGAGGATGCTTTGGATCGATGGGAGATGATTGCGGCTGATGTGCCGGGGAAGACTATAGAAGAAATCAAACAGCATTATGAACTCTTGGTTGAAGATGTTAACCAGATTGAATCTGGTTGTGTGCCTTTACCATCTTATAATTCTTCTTCAGAGGGCTCAACAAGCCATGCTAGTGATGAAGGAGCTGGCAAAAAGGGCAGCGGTCTTGGGAATTACAACAGTGAGTCTAATCATGGAACTAAGGCTTCAAGATCAGATCAAGAACGACGGAAGGGGATTGCTTGGACAGAGGATGAACACAGGTTATTTCTTCTGGGCTTGGATAAGTATGGGAAAGGTGATTGGCGAAGCATATCAAGGAACTTTGTGGTGACAAGAACACCTACACAAGTTGCAAGCCATGCCCAAAAATACTTCATTCGATTGAACTCGATGAACAAAGATAGAAGACGATCCAGCATACATGATATCACCAGCGTTAACAATGGAGACGTTTCAGCTCCACAAGGACCAATTACCGGTCAAACGAATGGTTCTGCCACAAATTCTACCGCCAAAGCAACCAAACAAGCCACCCCGGCCTCAACCGGGGTGTCAGGAGTTGGAATATATGCTGCTCCTACCATTGGACAACCTATAGGAGGACCCTTAGTATCAGCTGTTGGCACCCCAGTGAACCTTCCTGCACCTGGGCACATGGCATATGGTGTGAGAGCCCCAGTTTCAGGTGCGGTTGTACCTGGTGCACCGGTAAGCATGGGCCCTGTGACGTACTCTATGCCGCATACATCTGCTCCTCACAGGTGA 891 0.4759 MTVDEVDSSSEWSREQDKAFENALATHPEDALDRWEMIAADVPGKTIEEIKQHYELLVEDVNQIESGCVPLPSYNSSSEGSTSHASDEGAGKKGSGLGNYNSESNHGTKASRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSAPQGPITGQTNGSATNSTAKATKQATPASTGVSGVGIYAAPTIGQPIGGPLVSAVGTPVNLPAPGHMAYGVRAPVSGAVVPGAPVSMGPVTYSMPHTSAPHR 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02117 296 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Spst2g02117 296 Gene3D - 121 173 - -
Spst2g02117 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 171 IPR017930 -
Spst2g02117 296 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Spst2g02117 296 FunFam transcription factor MYB1R1 121 172 - -
Spst2g02117 296 CDD SANT 11 58 IPR001005 -
Spst2g02117 296 MobiDBLite consensus disorder prediction 1 32 - -
Spst2g02117 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 119 169 IPR006447 GO:0003677
Spst2g02117 296 CDD SANT 122 167 IPR001005 -
Spst2g02117 296 MobiDBLite consensus disorder prediction 72 119 - -
Spst2g02117 296 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Spst2g02117 296 MobiDBLite consensus disorder prediction 186 225 - -
Spst2g02117 296 SMART sant 8 60 IPR001005 -
Spst2g02117 296 SMART sant 119 169 IPR001005 -
Spst2g02117 296 Gene3D - 5 71 - -
Spst2g02117 296 PANTHER TRANSCRIPTION FACTOR KUA1 8 290 - -
Spst2g02117 296 MobiDBLite consensus disorder prediction 8 32 - -
Spst2g02117 296 FunFam Transcription factor SRM1 4 71 - -
Spst2g02117 296 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Spst2g02117 296 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Spst2g02117 296 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Spst2g02117 296 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Spst2g02117 296 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02117 Spst-Chr2 20220056 20226055 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst2g02117 Myb_DNA-binding 7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02117 - - ccaj:109792793 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02117 2 20220056 20226055 Spst2g02117 2 20220056 20226055 ECH