Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02079 ATGGATCACCCAAATCCCCCACACTCCTCCAAGTCTATACACACTTCAGATTCGCCGCACCACCGCGCCACTCCCACCTCTAACCGTTTCCTCAGCTCTCAACTTCTGAGGGAGAGAGAAGGAAAGGGTGAAGGGGAAAAGGAGGATCCGAGTTCCACACGAAAGGTTCTGAAAGCTGACCGCGAGAAACTTAGAAGGGATCGACTCAACGAACACTTCCAAGAGCTGGGAAACGCGTTAGGTGAAGGTAGAAACAGTGTCAATGATGTCGGTTGTTGTAACAGTAGTTGTAGTAATGGCAGTGAAGACGATGGTAGTAGAGATAGTGGTTGTTGTGACGGTGTTGGTGATGGTGGTGATCCTGATAGACCTAAGAATGACAAGGCAACTATACTTACTGAGACTGTCCAAATGCTAAAGGACTTAACTGCTGAAGTTAATAGGCTTAAAACTGAACATAAAGCGCTTTCTGAAGAGTCAAACGAACTAATGCAGGAAAAAAATGAACTTAGAGAAGAGAAGTCATCTCTAAAATCCGATATAGAAAATCTCAATGCTCAGTATCAGCAGAGAGTGAGAATCATGTTCCCATCATGGACTGCAATTGACCACTCTGTTGTCATTAGTCCACCTTACTCATATCCACTTCCTATACCTATCCCTCCTGCTCCAATTTCCATCCACCCATCTCTTCAACCTTTTCCTTTCTTTGGAAATCAAAACCCTGGTCACATTCCTAATCCTTGTTCAATGTATGTCCCTTATTCTACTCCACCTAATGCCCCACTTGAGCCACCATCTGCTCTGTATGCTTCCACGTCCCACGCATCGAACCAAAAGGAATCTTGTTGCAAGTCATCAGGTGATAGAAGGCCTAGTAGTGATGCCGACAGATGTAGCGAGTCTCACGATGTGGCCACAGAACTTGAACTCAAGATGCCTGGATCATCATCAACACAACAGGATTGCACTTCTGGAGAAAGGAAGGGCAAGCATTCAGTGATAAAGAATAGAACCATCATAGGTGGGAGTGCTTCAAGCCAGTATTCTTCGTCTCAAGGACTTCAAGATAGCTCCAACAGTGTGGGGTGA 1092 0.4533 MDHPNPPHSSKSIHTSDSPHHRATPTSNRFLSSQLLREREGKGEGEKEDPSSTRKVLKADREKLRRDRLNEHFQELGNALGEGRNSVNDVGCCNSSCSNGSEDDGSRDSGCCDGVGDGGDPDRPKNDKATILTETVQMLKDLTAEVNRLKTEHKALSEESNELMQEKNELREEKSSLKSDIENLNAQYQQRVRIMFPSWTAIDHSVVISPPYSYPLPIPIPPAPISIHPSLQPFPFFGNQNPGHIPNPCSMYVPYSTPPNAPLEPPSALYASTSHASNQKESCCKSSGDRRPSSDADRCSESHDVATELELKMPGSSSTQQDCTSGERKGKHSVIKNRTIIGGSASSQYSSSQGLQDSSNSVG 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02079 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 142 IPR011598 GO:0046983
Spst2g02079 363 PANTHER TRANSCRIPTION FACTOR BHLH121 32 89 IPR044579 GO:0003700|GO:0006879
Spst2g02079 363 MobiDBLite consensus disorder prediction 1 66 - -
Spst2g02079 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 168 IPR036638 GO:0046983
Spst2g02079 363 Gene3D - 52 170 IPR036638 GO:0046983
Spst2g02079 363 MobiDBLite consensus disorder prediction 279 363 - -
Spst2g02079 363 SMART finulus 59 148 IPR011598 GO:0046983
Spst2g02079 363 Pfam Helix-loop-helix DNA-binding domain 54 142 IPR011598 GO:0046983
Spst2g02079 363 MobiDBLite consensus disorder prediction 35 66 - -
Spst2g02079 363 Coils Coil 132 187 - -
Spst2g02079 363 MobiDBLite consensus disorder prediction 284 308 - -
Spst2g02079 363 MobiDBLite consensus disorder prediction 339 363 - -
Spst2g02079 363 MobiDBLite consensus disorder prediction 8 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02079 Spst-Chr2 19970663 19973530 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02079 52 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 47.955 7.55e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst2g02079 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02079 - - gmx:100818281 415.616