Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02067 ATGTCATCACAAACTGCCACGGCTGAGGGCGAGGCGCCACTGCTCCGCTCCCGTCACGATGGCTCCCGAACCCCCTCGTTAGCGCTCCTCCTCGGCCGGGCTGGCCGCCGTGGCCCCTCCATGCTGGTGCGGGAGACAGCTGCCCGGGAGCTGGAGGAGCGCCGCGCTGACTGGGGTTATTCCAAGCCGGTGGTGGCGCTCGATATGTCATGGAACATGGCCTTCGTCGTCGTCTCGGTGGCCATGCTCGCATGCACCACTCGAGAGCAGCCTAACACGCCGATCCGCGAGTGGATCGTTGGGTACGCGCTGCAGTGCCTTGTGCATGTGGTGCTCGTGTGGCTCGAGTACAGGCGCCGGAGTCGGAGAGAATCACTCCGTGCCGCAAGGGACGTGGGGAACAGTGCCCCAAGCGATGCTGGCGGCAGCGACAGCGACGAAGATGGGAGCTCTGGCATCTCTTCTCGCTCCCGGTTCACAAAACGATGTGAATCATTAAATACTGGGGTTTCATTCCTTTGGTGGATAGTGGGTTTTTACTGGGTTGTCTCTGGTGGTGATATGCTTCTGCAAGATGCCCCACGATTGTACTGGTTGTCTGTTGTCTTTCTGGCATTTGATGTTTTTTTTGCCATATTTTGTGTTGTCTTGGCGTGCTTGATTGGAATTGCTCTCTGTTGTTGTTTGCCCTGCATCATTGCAATTCTCTATGCTGTTGCAGGACAGGAAGGTGCGTCTGAAGCAGATCTTAGCATACTTCCAAAATACAAGTTTCGAATATCAAGCAGTGAGGATAAGTCCAATGGTGGAGCTGGATCAATGGTTCCAATTGAAACTAACAGTGCTTACTTGGCAAATGAACGAGTGCTTTTACCAGAGGATGCGGAATGCTGTATATGCCTCTGTTCGTATGAGGATGGAGCAGAGCTCCATGCTCTTCCTTGCAACCATCATTTTCATTCTTCATGTATAGTGAAATGGCTGAAGATGAATGCCACTTGTCCTCTCTGCAAGTACAATATTCTCAAGGGAAATGATCAAGTGTGA 1047 0.5291 MSSQTATAEGEAPLLRSRHDGSRTPSLALLLGRAGRRGPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSVAMLACTTREQPNTPIREWIVGYALQCLVHVVLVWLEYRRRSRRESLRAARDVGNSAPSDAGGSDSDEDGSSGISSRSRFTKRCESLNTGVSFLWWIVGFYWVVSGGDMLLQDAPRLYWLSVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYKFRISSSEDKSNGGAGSMVPIETNSAYLANERVLLPEDAECCICLCSYEDGAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNDQV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02067 348 MobiDBLite consensus disorder prediction 1 21 - -
Spst2g02067 348 SUPERFAMILY RING/U-box 285 342 - -
Spst2g02067 348 MobiDBLite consensus disorder prediction 130 155 - -
Spst2g02067 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 346 IPR013083 -
Spst2g02067 348 Pfam Ring finger domain 296 338 IPR001841 -
Spst2g02067 348 PANTHER TARGET OF ERK KINASE MPK-1 34 344 - -
Spst2g02067 348 SMART ring_2 297 337 IPR001841 -
Spst2g02067 348 CDD RING-H2_PA-TM-RING 296 338 - -
Spst2g02067 348 MobiDBLite consensus disorder prediction 138 155 - -
Spst2g02067 348 ProSiteProfiles Zinc finger RING-type profile. 297 338 IPR001841 -
Spst2g02067 348 FunFam E3 ubiquitin protein ligase RIE1 277 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02067 Spst-Chr2 19846822 19854484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02067 8 347 C3H Transcription Factor Family AT1G68070 67.442 1.22e-171 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02067 - K13148 gmx:100816519 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02067 2 19846822 19854484 Spst2g02067 2 19846822 19854484 ECH