LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst2g02004	ATGAGAACCCTTTTGAATTCCCTTGTCACTAACGTGGAAATCAAACACCCTGTTGCGGGTCTTGTTTCTTTAGTTGATGAATGTGAATGGGAAAGTAAAAGTGAAATTGAGTCCAATTTTGTTGAGAAACTGTGTGACATGTTGTTCAGGGTGTGTGCTGATAACAAGATGTTTAGAGAGGCTATTGGGGTGTTTGAATATGTAATGGCAAAGGGTTTGGTGATAGATGGTAGGTCTTGCTTTATGCTTTTGCTTGCCTTGAAGAGATGTAATGATGTGGAGTTCTGTGTGAGGTTCTTTCGTCAGATGGTGGAGTCTGGCCGCGTTAATATCGGGGTTCAGTCTTTGACTCTTGTGGTTGATGTGCTGTCTAGGAGAGGGCAGGTCGAGAGGGCTAAGAAGTTGATGGAGGAGATGGCTGAGAAAGGCATTGTGAGGCCGACGGTTTTTACTTATAATACATTGTTGAATGCTTGTGTCGTGAGGAAGGATCGAAGGGGGGTGGATGAGATTCTGGGGTTGATGGAGAGCGAGGGAGTGCAGCCTTGTTTGACGACGTATACTATTTTGATTGAGGGATATGGGAATTCTGGGAGAATTGGGGAGGCTGAGAAGGTGTTTGAGGAAATGGGTGAGAGGAATGTGGAGATGGATGTCTATACACGCCTGACGCCTCCAGCTGGCCAAACAATGGTTTGTCAATTTCACAAGGGAAGGTGGCTCATACATGATGATTTTGTCCTTGAAGCCCAACCAATAATTAGAGCTTGGAAACTGTTACAATGTACAAATATTCTAGTGTTGGGTAACATATACAAACCTCAGAAGGAAAGGTGGCTCATACATGATGACACATCAGGTACTGTTGCAACCTATGAAACAATCCATCAGGATATATACAATGTGACAGAAGAGAAACGTGCAAGCCTAATTCTCCTTCCATTCCACAAAGAACTAAACTCAGAAGGTGTGTTGGAAACAGCCAACAATGCATTCGGTGACATAAACAAGAATGTGTTGCAGGAACCACCTTGTTCTGTGGGGATCCTTGTGAACCGTGGATTCAGGCCATTGTCTAAAACAACCATGAACATCATTATGGTTTTCATCAGAGGGCCTGATGATCGCAAAGCCTTGTCAATTGCATGGAGAATTGATAGAATCACTGTCAAAAGAAGGGCTGAAGGAATACTTGGTGACAACACTGTTTTCTATTATGGTAGTACTGCTTGA	1233	0.4339	MRTLLNSLVTNVEIKHPVAGLVSLVDECEWESKSEIESNFVEKLCDMLFRVCADNKMFREAIGVFEYVMAKGLVIDGRSCFMLLLALKRCNDVEFCVRFFRQMVESGRVNIGVQSLTLVVDVLSRRGQVERAKKLMEEMAEKGIVRPTVFTYNTLLNACVVRKDRRGVDEILGLMESEGVQPCLTTYTILIEGYGNSGRIGEAEKVFEEMGERNVEMDVYTRLTPPAGQTMVCQFHKGRWLIHDDFVLEAQPIIRAWKLLQCTNILVLGNIYKPQKERWLIHDDTSGTVATYETIHQDIYNVTEEKRASLILLPFHKELNSEGVLETANNAFGDINKNVLQEPPCSVGILVNRGFRPLSKTTMNIIMVFIRGPDDRKALSIAWRIDRITVKRRAEGILGDNTVFYYGSTA	410

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst2g02004	410	Gene3D	Tetratricopeptide repeat domain	18	244	IPR011990	GO:0005515
	Spst2g02004	410	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL	2	221	-	-
	Spst2g02004	410	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	183	217	IPR002885	-
	Spst2g02004	410	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	112	146	IPR002885	-
	Spst2g02004	410	NCBIfam	pentatricopeptide repeat	150	182	IPR002885	-
	Spst2g02004	410	NCBIfam	pentatricopeptide repeat	117	145	IPR002885	-
	Spst2g02004	410	NCBIfam	pentatricopeptide repeat	186	219	IPR002885	-
	Spst2g02004	410	Pfam	Pentatricopeptide repeat domain	134	196	IPR002885	-
	Spst2g02004	410	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	148	182	IPR002885	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst2g02004	Spst-Chr2	19225248	19227379	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst2g02004	285	396	Antiporter Super Family	AT1G05580	40.323	1.33e-22	98.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst2g02004	-		-	gmx:100789169	325.865

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