Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02004 ATGAGAACCCTTTTGAATTCCCTTGTCACTAACGTGGAAATCAAACACCCTGTTGCGGGTCTTGTTTCTTTAGTTGATGAATGTGAATGGGAAAGTAAAAGTGAAATTGAGTCCAATTTTGTTGAGAAACTGTGTGACATGTTGTTCAGGGTGTGTGCTGATAACAAGATGTTTAGAGAGGCTATTGGGGTGTTTGAATATGTAATGGCAAAGGGTTTGGTGATAGATGGTAGGTCTTGCTTTATGCTTTTGCTTGCCTTGAAGAGATGTAATGATGTGGAGTTCTGTGTGAGGTTCTTTCGTCAGATGGTGGAGTCTGGCCGCGTTAATATCGGGGTTCAGTCTTTGACTCTTGTGGTTGATGTGCTGTCTAGGAGAGGGCAGGTCGAGAGGGCTAAGAAGTTGATGGAGGAGATGGCTGAGAAAGGCATTGTGAGGCCGACGGTTTTTACTTATAATACATTGTTGAATGCTTGTGTCGTGAGGAAGGATCGAAGGGGGGTGGATGAGATTCTGGGGTTGATGGAGAGCGAGGGAGTGCAGCCTTGTTTGACGACGTATACTATTTTGATTGAGGGATATGGGAATTCTGGGAGAATTGGGGAGGCTGAGAAGGTGTTTGAGGAAATGGGTGAGAGGAATGTGGAGATGGATGTCTATACACGCCTGACGCCTCCAGCTGGCCAAACAATGGTTTGTCAATTTCACAAGGGAAGGTGGCTCATACATGATGATTTTGTCCTTGAAGCCCAACCAATAATTAGAGCTTGGAAACTGTTACAATGTACAAATATTCTAGTGTTGGGTAACATATACAAACCTCAGAAGGAAAGGTGGCTCATACATGATGACACATCAGGTACTGTTGCAACCTATGAAACAATCCATCAGGATATATACAATGTGACAGAAGAGAAACGTGCAAGCCTAATTCTCCTTCCATTCCACAAAGAACTAAACTCAGAAGGTGTGTTGGAAACAGCCAACAATGCATTCGGTGACATAAACAAGAATGTGTTGCAGGAACCACCTTGTTCTGTGGGGATCCTTGTGAACCGTGGATTCAGGCCATTGTCTAAAACAACCATGAACATCATTATGGTTTTCATCAGAGGGCCTGATGATCGCAAAGCCTTGTCAATTGCATGGAGAATTGATAGAATCACTGTCAAAAGAAGGGCTGAAGGAATACTTGGTGACAACACTGTTTTCTATTATGGTAGTACTGCTTGA 1233 0.4339 MRTLLNSLVTNVEIKHPVAGLVSLVDECEWESKSEIESNFVEKLCDMLFRVCADNKMFREAIGVFEYVMAKGLVIDGRSCFMLLLALKRCNDVEFCVRFFRQMVESGRVNIGVQSLTLVVDVLSRRGQVERAKKLMEEMAEKGIVRPTVFTYNTLLNACVVRKDRRGVDEILGLMESEGVQPCLTTYTILIEGYGNSGRIGEAEKVFEEMGERNVEMDVYTRLTPPAGQTMVCQFHKGRWLIHDDFVLEAQPIIRAWKLLQCTNILVLGNIYKPQKERWLIHDDTSGTVATYETIHQDIYNVTEEKRASLILLPFHKELNSEGVLETANNAFGDINKNVLQEPPCSVGILVNRGFRPLSKTTMNIIMVFIRGPDDRKALSIAWRIDRITVKRRAEGILGDNTVFYYGSTA 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02004 410 Gene3D Tetratricopeptide repeat domain 18 244 IPR011990 GO:0005515
Spst2g02004 410 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 2 221 - -
Spst2g02004 410 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 217 IPR002885 -
Spst2g02004 410 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
Spst2g02004 410 NCBIfam pentatricopeptide repeat 150 182 IPR002885 -
Spst2g02004 410 NCBIfam pentatricopeptide repeat 117 145 IPR002885 -
Spst2g02004 410 NCBIfam pentatricopeptide repeat 186 219 IPR002885 -
Spst2g02004 410 Pfam Pentatricopeptide repeat domain 134 196 IPR002885 -
Spst2g02004 410 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02004 Spst-Chr2 19225248 19227379 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02004 285 396 Antiporter Super Family AT1G05580 40.323 1.33e-22 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02004 - - gmx:100789169 325.865