Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01965 ATGTCAAACCCGGTGTTTCTTAAGTGTCCTGATAGGACTGAGTGGAAGATATATTGGACTAAGCATGATGGTGAGATTGGGTTCCAAAAGGGGTGGAAGGAGTTTGCCACATACTATTCTCTAGATCATGGTCACTTGCTGCTCTTTGAATATGATGGAACTTCTCATATTGATGTGCACATATTTGACAGTAGTGCCCTTGAAATAGACTATCCTTCCCACACTACTCATGATAGACTGGACAACCTTATCTACATTATTGATGATTCTGATGAAAGTTTGTTGGAACAATTTTCATGCCAAAATGCTAGTGTGAAACTATCCCGGTCTTCACCTCAACCTTGTAAGAAAATGAAAAATAGCATAACCACAAGTGTTGTGAAAAGCCCCAACTGGGTAACTTTGTATCAGCATGTCCAAACTAGAAGTTCTAGCTCTCGAGAGGAAAAATCTATAAAGCAAAAATTAGATGAAAATGAAGTTAAAGACCCTCCTAACAATGAATGCTCAAAAGTGGAGCAGTTAACTTCTACTGCTTTAAAGAAAGCCATAACTTTCAAATCTGAACACCCTTCTTTCCTGCTTGTCATGAAGGAATCTTTTATTAATGGATATTACCTGAAGATCCAAGGCCTTGCTTTCAAAGTTTCCATCTTTCGAGGTGCCGAGGAAGCAAGTTGCCCCATTTCACAAGGTGGAAGTTCAAGTCAAAGATGTTCACTGTTGGAAAGTCACTTCAAGTCAGAGATCTTAACCAGAGCTCATAAAGAAGCTGACAAATTCAAATCAAAAAATCCCTTTTTCATGGTCACTTTACAAGGGCAGGGAAACACAATCAGATGCCCGCTCTCTGGTGGTTGGGCCTCATTTACAAGAGAAAATAACCTGCAACCTGGAGATGTTTGTATCTTTGAGCTTGTGAATAGAAAAGATGCAACACTTGATGTTCATGTTTTTAGAAGCCGTGCACCTGATGAAGTTGGAATGGGACGCCGCTTTTGCATAGTCTCCAGAGCCGCAGAGAGAGAGAGAGAAATGGGGAACAAAGAAAAGGCTAAGGAACGAAGAGAAAAGCGATTGCAAGATATACGCCACCAGATGACGATTCCTTATTCTGATCGTCAGAGGTGGTGGTCCAAGGAAACTGTTGCTGTTGTTACCGGTGGAAATAGAGGAATTGGGTTTGAGATTTGTAGACAACTTGCCGTTCATGGATTGACTGTTATCCTGACATCAAGAGACTCTAATGCTGGTGTTGAATCAATTAAATTTTTGCAAGAAAGGGGTCTTAATGTGGTTTATCATCAACTAGACGTAGTAGACTATTCATCCATCAACCAGTTTGTGGAGTGGTTGCGGGAAAATTATGGTGGTTTAGATATTCTGGTAAACAATGCTGGTGTTAATTTCAATCTTGGGTCTGATAACTCAGTCGAAAATGCTCGTAAGGTTATTGAAACAAATTATTACGGCATCAAGCACATGATTGAAGCTATTATTCCATTGATGAAGCCATCCCTTGTTGGTGCTCGTATTGTAAATGTAAGCTCACGCCTTGGTCGACTAAATGGAAGACGGAATAGAATCAGCAATGTAGCCTTAAGGGAGGAACTGAGTGACGTGGAATCCCTTTCAGATGAACTTATTGACAGGACTCTATCTACTTTTCTGCAACAAGTTGAGGATGGAACTTGGACTACAAGTGGGTGGCCTCAAGTGTATACTGATTACTCAGTGTCCAAACTAGCTGTTAATGCCTATACAAGGCTTACGGCAAGGAAGCTTTCTGAGAGACCAGAGGGTCAGAAGATTTATATTAACTGCTATTGCCCAGGTTGGGTGAAGACAGCCCTTACAGGTTATGAAGGGAATAACACTGTTGAGGAAGGGGCTGATACTGGAGTGTGGCTTGCCCTTCTTTCGGACCAATCATTCATGGGAAAGTTGTTCGCTGAGAGACGGGAAATTAACTTCTAA 1977 0.4117 MSNPVFLKCPDRTEWKIYWTKHDGEIGFQKGWKEFATYYSLDHGHLLLFEYDGTSHIDVHIFDSSALEIDYPSHTTHDRLDNLIYIIDDSDESLLEQFSCQNASVKLSRSSPQPCKKMKNSITTSVVKSPNWVTLYQHVQTRSSSSREEKSIKQKLDENEVKDPPNNECSKVEQLTSTALKKAITFKSEHPSFLLVMKESFINGYYLKIQGLAFKVSIFRGAEEASCPISQGGSSSQRCSLLESHFKSEILTRAHKEADKFKSKNPFFMVTLQGQGNTIRCPLSGGWASFTRENNLQPGDVCIFELVNRKDATLDVHVFRSRAPDEVGMGRRFCIVSRAAEREREMGNKEKAKERREKRLQDIRHQMTIPYSDRQRWWSKETVAVVTGGNRGIGFEICRQLAVHGLTVILTSRDSNAGVESIKFLQERGLNVVYHQLDVVDYSSINQFVEWLRENYGGLDILVNNAGVNFNLGSDNSVENARKVIETNYYGIKHMIEAIIPLMKPSLVGARIVNVSSRLGRLNGRRNRISNVALREELSDVESLSDELIDRTLSTFLQQVEDGTWTTSGWPQVYTDYSVSKLAVNAYTRLTARKLSERPEGQKIYINCYCPGWVKTALTGYEGNNTVEEGADTGVWLALLSDQSFMGKLFAERREINF 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01965 658 Pfam B3 DNA binding domain 270 321 IPR003340 GO:0003677
Spst2g01965 658 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 382 641 IPR036291 -
Spst2g01965 658 MobiDBLite consensus disorder prediction 144 169 - -
Spst2g01965 658 ProSiteProfiles B3 DNA-binding domain profile. 283 322 IPR003340 GO:0003677
Spst2g01965 658 SUPERFAMILY DNA-binding pseudobarrel domain 4 65 IPR015300 -
Spst2g01965 658 CDD B3_DNA 283 320 IPR003340 GO:0003677
Spst2g01965 658 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 383 655 - -
Spst2g01965 658 MobiDBLite consensus disorder prediction 144 167 - -
Spst2g01965 658 Gene3D - 375 658 - -
Spst2g01965 658 Gene3D - 1 66 IPR015300 -
Spst2g01965 658 SUPERFAMILY DNA-binding pseudobarrel domain 280 321 IPR015300 -
Spst2g01965 658 CDD carb_red_PTCR-like_SDR_c 383 658 IPR045313 GO:0016616
Spst2g01965 658 PRINTS Glucose/ribitol dehydrogenase family signature 602 619 IPR002347 -
Spst2g01965 658 PRINTS Glucose/ribitol dehydrogenase family signature 457 468 IPR002347 -
Spst2g01965 658 PRINTS Glucose/ribitol dehydrogenase family signature 577 596 IPR002347 -
Spst2g01965 658 PRINTS Glucose/ribitol dehydrogenase family signature 383 400 IPR002347 -
Spst2g01965 658 Pfam short chain dehydrogenase 383 522 IPR002347 -
Spst2g01965 658 FunFam (+)-neomenthol dehydrogenase 376 658 - -
Spst2g01965 658 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Spst2g01965 658 Coils Coil 531 551 - -
Spst2g01965 658 Gene3D - 273 322 IPR015300 -
Spst2g01965 658 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 510 518 IPR002347 -
Spst2g01965 658 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 457 468 IPR002347 -
Spst2g01965 658 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 577 596 IPR002347 -
Spst2g01965 658 CDD B3_DNA 2 63 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01965 Spst-Chr2 18694400 18700152 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01965 1 320 B3 DNA Binding Superfamily AT3G18990 26.857 1.04e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst2g01965 adh_short 2.5e-31 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01965 K00079 - gmx:100790340 539.265