Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01964 ATGGTTGTCAGTCATAATTGTGATTCGAGCGACGACGATGATCGTGGTGGCGACGGCAGCTGCATGGCTTCCAAACCCCGCACTGTTGAAGAAATCTTCATGGATTATAGAGCTCGAAGAACCGCTATTATTCGCGCTCTCACTCACGACGTTGATGAATTTTACGGACTCTGTGATCCAGGTAAGGATAACTTGTGTCTCTATGGCCATCCAAACGGGGCCTGGGAAGTAACTCTGCCGTCGGAGGAAGTTCCGCCGGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCCAGGGACGACGTGAGCCGCAAGGACTGGCTTTCTCTGGTTGCTGTGCATAGTGACTCATGGCTTCTTTCTGTGGCCTTTTACCTTGGAACTCGTCTTAACCACAATGAAAGAAAACGTTTATTTGGTTTGATCAATGGTCTTCAAACCGTTTTTCAAGTTGTGACTGGCAATAAACCAATTAAGGAGAAGCCCACCATGGATAGTGTGACCAAATCTGGTGTAAGCATCGAGGGAACTGTGATGAGAAATGATCATGTTAGAATATTTTGTGGAAGCTGTGGTGAAAAATACAATGGAGATGAACTTTGGATCGGGTGCGACGTATGTGAGTGGTGGTACCATGGGAAGTGCGTTATGATCAATCCTGCAAAGGCTGACACCCTAAAGCGCTATAAATGTCCATCATGCTGCTTGAGGAGGAGCAGGTTGCTCGAGGAGAAGGAAAAGAAACTTCCGCCGAAATTCACTGAAAAATACGGAGATAGTATGTCAAACCCTGTGTTTCTCAAGCCTCCAGATGACACTGAATGGAAAATATACTGGACCAAGCATGATGATGATATTTGGTTTCAAAAAGGTTGGAAGGAGTTTGAAACCTACTATTCTCTAAATCATGGCCACTTGTTGTTCTTTCAATATCAAGGAACAGCTCATCTTAATGTGCATATATTTGACAATAGTGCTGTTGAAATAGACTATCCTCCCTTCAGTACTCATGATGCGATGGACAATCTTGCTGAGATTGACGATGATTGTGTTGAAATTTGGGATGGACAATTTTCTTGCCAAAAGACTAGAGTGAAATCAACAGTGTCATCTCCTAAACCTTGTAAGAAAATGAAGAATAGCTTAAGTACAACTACAATTGTTGAAAGGTTCGGTAATGGAGTAAACTTGCATAAACATGCCCAAAGTGTAAGTAAAAGATCTCAGAAGACATCATCTATGAAGCAAAATTTAGATGGTGGAACTTCAAGTCAAAGATCTTCACAGTTGGAAAGCCACTTCAATTCAGGGATCATAACAGACAGACCTCTTAAAGAAGCTTGCAAATTCACATCAGAAAATCCTTTTTGCATGGTCACTTTAACTCTAAATCGAACGTTAATGGTAGCTGATCCCCGGTAA 1422 0.4255 MVVSHNCDSSDDDDRGGDGSCMASKPRTVEEIFMDYRARRTAIIRALTHDVDEFYGLCDPGKDNLCLYGHPNGAWEVTLPSEEVPPELPEPALGINFARDDVSRKDWLSLVAVHSDSWLLSVAFYLGTRLNHNERKRLFGLINGLQTVFQVVTGNKPIKEKPTMDSVTKSGVSIEGTVMRNDHVRIFCGSCGEKYNGDELWIGCDVCEWWYHGKCVMINPAKADTLKRYKCPSCCLRRSRLLEEKEKKLPPKFTEKYGDSMSNPVFLKPPDDTEWKIYWTKHDDDIWFQKGWKEFETYYSLNHGHLLFFQYQGTAHLNVHIFDNSAVEIDYPPFSTHDAMDNLAEIDDDCVEIWDGQFSCQKTRVKSTVSSPKPCKKMKNSLSTTTIVERFGNGVNLHKHAQSVSKRSQKTSSMKQNLDGGTSSQRSSQLESHFNSGIITDRPLKEACKFTSENPFCMVTLTLNRTLMVADPR 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01964 473 SUPERFAMILY DNA-binding pseudobarrel domain 247 325 IPR015300 -
Spst2g01964 473 SMART B3_2 226 325 IPR003340 GO:0003677
Spst2g01964 473 MobiDBLite consensus disorder prediction 401 435 - -
Spst2g01964 473 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Spst2g01964 473 SMART PHD_3 187 235 IPR001965 -
Spst2g01964 473 Gene3D - 235 326 IPR015300 -
Spst2g01964 473 FunFam PHD finger alfin-like protein 180 236 - -
Spst2g01964 473 Pfam B3 DNA binding domain 239 324 IPR003340 GO:0003677
Spst2g01964 473 CDD PHD_AL_plant 187 237 IPR044104 -
Spst2g01964 473 CDD B3_DNA 232 323 IPR003340 GO:0003677
Spst2g01964 473 PANTHER CPG BINDING PROTEIN 25 240 IPR045104 GO:0006355|GO:0042393
Spst2g01964 473 ProSiteProfiles B3 DNA-binding domain profile. 232 325 IPR003340 GO:0003677
Spst2g01964 473 Pfam Alfin 28 153 IPR021998 GO:0006355|GO:0042393
Spst2g01964 473 Pfam PHD-finger 187 235 IPR019787 -
Spst2g01964 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 234 IPR013083 -
Spst2g01964 473 MobiDBLite consensus disorder prediction 1 23 - -
Spst2g01964 473 SUPERFAMILY FYVE/PHD zinc finger 184 241 IPR011011 -
Spst2g01964 473 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01964 Spst-Chr2 18680216 18689857 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01964 23 240 Alfin-like Transcription Factor Family AT5G05610 63.559 3.08e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst2g01964 Alfin 1.7e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01964 K26274 - vra:106776977 390.578